BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943214
Length=2290
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04370.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3330 0.0
> AT4G04370.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:2134060-2136249 REVERSE LENGTH=2190
Length=2190
Score = 3330 bits (1803), Expect = 0.0
Identities = 2066/2194 (94%), Gaps = 14/2194 (1%)
Strand=Plus/Plus
Query 24 ATGATCAG-ACGTTCGTCTGTGTTAAACTCCACCAAGTACTTCAACTCTCACATTAACCA 82
|||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATCAGAAC-TTCGTCTGTGTTGAACTCCACCAAGTACTTCAACTCTCACATTAACCA 59
Query 83 TTTATCATCTCATGGCGATCACAAGCAAGTTCTCTCCACATTCTCTTCCATGCTCGCTAA 142
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 60 TTTATCATCTCATGGCGATCACAAGCAAGTTCTCTCAACATTCTCTTCCATGCTCGCCAA 119
Query 143 TAAACTCTTACCTGATACTTTTACTTTCCCTAGTCTTCTCAAAGCCTGTACTTCTCTTCA 202
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 120 TAAACTCTTACCTGATACTTTTACTTTCCCTAGTCTTCTCAAAGCTTGTGCTTCTCTTCA 179
Query 203 GCTCCTATCTTTTGGTCTCTCGATTCATCAGAAGGTTCTCGTTAATGGGTTCTCTTCTGA 262
|| ||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| ||
Sbjct 180 GCGCCTCTCTTTTGGTCTCTCGATTCACCAGCAGGTTCTCGTTAATGGGTTCTCTTCAGA 239
Query 263 -TTCATACATCTCGTCTTCATTGGTCAATCTTTATGCGAAATTTGGACTCTTGGGTCATG 321
||| ||||| || |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 TTTC-TACATATCATCTTCATTGGTCAATCTTTATGCGAAATTTGGACTCTTGGCTCATG 298
Query 322 CTCGGAAAGTGTTCGACGAAATGCGTGACAGAGATGTGGTACACTGGACTGCGATGATTG 381
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 299 CTCGGAAAGTGTTCGAGGAAATGCGTGAGAGAGATGTGGTGCACTGGACTGCGATGATTG 358
Query 382 GGTGTTACTCACGCGCTGGAATTTTTGGAGAAGCGTGCTCGTTGGTGAAAGAGATGAGAT 441
||||||||||||||||||||||| |||||||||| || ||||||||||| ||||||||||
Sbjct 359 GGTGTTACTCACGCGCTGGAATTGTTGGAGAAGCTTGTTCGTTGGTGAACGAGATGAGAT 418
Query 442 TTCAGGGGATTAAACCGAGTCCGGTTACGTTTTTGGAAATGTTGAGTGGGATTTCGGAGA 501
|||||||||| |||||| ||||||||||||| |||||||||||||||||| ||| ||||
Sbjct 419 TTCAGGGGATCAAACCGGGTCCGGTTACGTTGTTGGAAATGTTGAGTGGGGTTTTAGAGA 478
Query 502 TTAAGCAGTTACAGTGTTTACATGCCTTTGC-GTTAGTTTATGGGTTTGAGTGTGATATA 560
||| |||||||||||||||||||| |||||| || | ||||||| ||||| |||||||||
Sbjct 479 TTACGCAGTTACAGTGTTTACATGACTTTGCTGTGA-TTTATGGTTTTGATTGTGATATA 537
Query 561 GCTGTGATGAACTCTATGTTGAATTTGTACTGTAAGTGTGATCGTGTTGGAGATGCTAAG 620
||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||
Sbjct 538 GCTGTGATGAACTCTATGTTGAATTTGTATTGCAAGTGTGATCATGTTGGAGATGCTAAG 597
Query 621 GAGTTATTTGATCAGATGGAGCAACGAGATATGGTTTCATGGAACACAATGATTTCAGGG 680
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GATTTATTTGATCAGATGGAGCAACGAGATATGGTTTCATGGAACACAATGATTTCAGGG 657
Query 681 TTTGCTTTTGTTGCTAATATGTCTGAAATATTGAAGCTTTTGTACAGAATGAGAGATGAT 740
| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 658 TATGCTTCTGTTGGTAATATGTCTGAAATCTTGAAGCTTTTGTACAGAATGAGAGGTGAT 717
Query 741 GGTTTAAGACCTGATCAACAGACATTTGGAGCATCACTTTCAGTGAGTGGAACAATGTGT 800
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GGTTTAAGACCTGATCAGCAGACATTTGGAGCATCACTTTCAGTGAGTGGAACAATGTGT 777
Query 801 GATCTTGAAATGGGAAGAATGTTGCACTGCCAAATTGTTAGAACTGGTTTCGACGGAGAC 860
|||||||||||||||||||||||||||||||||||||| | ||||||||| || | |||
Sbjct 778 GATCTTGAAATGGGAAGAATGTTGCACTGCCAAATTGTAAAAACTGGTTTTGATGTAGAT 837
Query 861 ATGCATCTCA-GAACGGCGTTGATAACTATGTACTTAAAATGTGGAGAGGAGGAAGCTTC 919
|||||||||| || |||| |||||||| |||||||| || |||||| |||||||||||||
Sbjct 838 ATGCATCTCAAGA-CGGCATTGATAACAATGTACTTGAAGTGTGGAAAGGAGGAAGCTTC 896
Query 920 ATATCGAGTACTCGAAACCATTCCTGATAAGGATGTTGTTTGCTGGACAGTCATGATATC 979
|||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 897 ATATCGGGTACTCGAAACGATTCCCAATAAGGATGTTGTTTGCTGGACAGTCATGATATC 956
Query 980 AGGACTTATGCGGTTGGGTAGAGCGGAAAAGGCACTGATTATTTTCTCGGAAATGTTACA 1039
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 957 AGGACTTATGCGGTTGGGTAGAGCAGAAAAGGCACTGATTGTTTTCTCGGAAATGTTACA 1016
Query 1040 TTCAGGATCAGACCTATCGAGTGAAGCAATAGCTAGTGTTGTAGCATCTTGTGCTCAATT 1099
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 ATCAGGATCAGACCTGTCGAGTGAAGCAATAGCTAGTGTTGTAGCATCTTGTGCTCAATT 1076
Query 1100 GGGTTCCTTTGATCTTGGCGCTTCAGTCCATGGTTATGTACTGAGGCAAGGATATACACT 1159
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1077 GGGTTCCTTTGATCTTGGCGCTTCAGTCCATGGCTATGTACTGAGGCATGGATATACACT 1136
Query 1160 AGACACTCCTGCTTTAAACTCTTTTATCACAATGTATGCAAAGTGTGGCCATTTGGATAA 1219
|||||||||||| || |||||||| |||||||||||||||||||| || |||||||||||
Sbjct 1137 AGACACTCCTGCGTTGAACTCTTTGATCACAATGTATGCAAAGTGCGGTCATTTGGATAA 1196
Query 1220 AAGTTTAATTCTTTTTGATCGGATGAATGAAAGAGACTTAGTTTCGTGGAATGCAATTAT 1279
||||||| || | ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1197 AAGTTTAGTTATCTTTGAACGGATGAATGAAAGAGACTTAGTTTCGTGGAATGCGATTAT 1256
Query 1280 ATCCGGACATGCCCAGCACGGAGATCTGTGTAAGGCATTGTTGTTGTTTGAAGAAATGAA 1339
|||||| |||||||| ||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct 1257 CTCCGGATATGCCCAGAACGTAGATCTGTGTAAGGCCTTGTTATTGTTTGAAGAAATGAA 1316
Query 1340 GTTCAAAACCGTGCAACAAGTTGATTCATTGACAGTTGTCTCGCTTTTACAAGCCTGTTC 1399
|||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 1317 GTTCAAAACCGTGCAACAAGTTGATTCATTTACTGTTGTCTCACTTTTACAAGCCTGTTC 1376
Query 1400 ATCTGCTGGAGCTCTCCCAGTAGGGAGAA-TGATCCACTGTATTGTAATCAGAAGCTTCA 1458
|||||||||||||||||| ||||||| || |||||||||||||||||||||||||||| |
Sbjct 1377 ATCTGCTGGAGCTCTCCCTGTAGGGA-AACTGATCCACTGTATTGTAATCAGAAGCTTTA 1435
Query 1459 TCAGGCCATGTACCTTGGTTGATACGGCTCTGGTTGATATGTATTCGAAATGTGGCTACT 1518
||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1436 TCAGGCCATGTTCCTTGGTTGATACAGCTCTAGTTGATATGTATTCGAAATGTGGCTACT 1495
Query 1519 TAGAAGCTGCACAGAGGTGTTTCAATTCGATCACATGGAAAGATGTTGTTTCATGGGGAA 1578
||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| |
Sbjct 1496 TAGAAGCTGCACAGAGGTGTTTCGATTCGATCTCGTGGAAAGATGTTGTTTCATGGGGCA 1555
Query 1579 CACTCATTGCAGGGTATGGTTTTCATGGTAAAGGGGATATTGCTTTGGAAATTTACTCAG 1638
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 TACTCATTGCAGGGTATGGTTTTCATGGTAAAGGGGATATTGCTTTGGAAATTTACTCAG 1615
Query 1639 AGTTTCTTCACTTTGGAATGAAGCCGAACCACGTGATTTTTCTTGCGGTTCTCTCATCTT 1698
|||||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||||
Sbjct 1616 AGTTTCTTCACTCTGGAATGGAGCCGAACCACGTGATATTTCTTGCAGTTCTCTCATCTT 1675
Query 1699 GCAGCCATAATGGAATGGTTCAGCAAGGTTTGAAAATATTCAGTTCAATGGTTAGAGATT 1758
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1676 GCAGCCATAATGGAATGGTTCAACAAGGTTTGAAAATATTCAGTTCAATGGTCAGAGATT 1735
Query 1759 TTGGTGTTGAACCGAATCACGAACACCTTGCTTGTGTGGTTGATCTTCTATGTAGAGCTA 1818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 TTGGTGTTGAACCGAATCACGAACACCTTGCTTGTGTGGTTGATCTTCTATGTAGAGCTA 1795
Query 1819 AGAGAGTAGAAGATGCGTTCAAGTTCTACAAAGAGAACTTTACGAGACCTTCAATTGATG 1878
| ||| ||||||| || |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1796 AAAGAATAGAAGACGCATTCAAGTTCTACAAAGAGAACTTTACCAGACCTTCGATTGATG 1855
Query 1879 TCTTGGGTATAATACTCGATGCTAGCCATGCAAATGGGAAAACAGAGGTCGAAGATATAA 1938
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1856 TCTTGGGTATAATACTCGATGCTTGCCGTGCAAATGGGAAAACAGAGGTCGAAGATATAA 1915
Query 1939 TTTGTCG-GGATATGATCGAGTTGAAGCCAGTGGACGCTGGACATTATGTTAGACTTGGA 1997
||||| | ||||||||||||||||||||||| ||||||||||||||| || | ||| |||
Sbjct 1916 TTTGT-GAGGATATGATCGAGTTGAAGCCAGGGGACGCTGGACATTACGTAAAACTAGGA 1974
Query 1998 CATTCTTTTGCTGCGATGAAGAGATGGGACGATGTGAGTGAATCATGGAATCAGATGAGG 2057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 CATTCTTTTGCTGCGATGAAGAGATGGGACGATGTGAGTGAATCATGGAATCAGATGAGG 2034
Query 2058 TCTCTCGGCCTT-AAAAAGCTCCCGGGATGGAGCAAAATCGAGATAAACGGGAAAACCAC 2116
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2035 TCTCTCGGC-TTGAAAAAGCTCCCGGGATGGAGCAAAATCGAGATGAACGGGAAAACCAC 2093
Query 2117 AACATTTTTCATGAATCATACATCACATTCAGATGAAACAGTGTCTCTGTTAAAACTTCT 2176
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 2094 AACATTTTTCATGAATCATACATCACATTCAGATGATACAGTGTCTCTATTAAAACTTCT 2153
Query 2177 TAGCAGGGAAATGATGCAGTTTGGTTCAAAGAAT 2210
|||||||||||||||||||||||||||||| |||
Sbjct 2154 TAGCAGGGAAATGATGCAGTTTGGTTCAAATAAT 2187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113654033880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5