BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943218
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04470.1 | Symbols: PMP22 | Peroxisomal membrane 22 kDa (Mpv... 907 0.0
> AT4G04470.1 | Symbols: PMP22 | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
family protein | chr4:2227661-2229280 REVERSE LENGTH=929
Length=929
Score = 907 bits (491), Expect = 0.0
Identities = 574/614 (93%), Gaps = 6/614 (1%)
Strand=Plus/Plus
Query 1 GAAGAGAAGAATCCaaaaaaaTGGGATCTT---CACCGAAGAAGACGACTCTGCAACGGT 57
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 35 GAAGAGAAGAATCCAAAAAAATGGGATCTTCACCACCGAAGAAGACGACTCTGCAACGGT 94
Query 58 ACTTGTCACAGCTTCAACAACATCCTTTAAGAACAAAGGCAATAACTGCTGGAGTATTGT 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 95 ACTTGTCACAGCTTCAACAACATCCTTTAAGAACAAAGGCAATAACTGCTGGAGTTTTGT 154
Query 118 CCGGTGTCAGCGATGTTGTATCGCAGAAACTATCTGGCATACAGAAGATTCAGCTGAGAA 177
| ||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 155 CTGGTGTTAGCGATGTTGTATCACAGAAGCTCTCTGGCATACAGAAGATTCAGCTGAGAA 214
Query 178 GGGTTCTTCTCAAAATGATATTTGCGGGTGGTTTTCTCGGACCAGC-GGGTCATTTCTTT 236
|||||||||||||| |||||||||| ||||| ||||| |||||||| ||| |||||||||
Sbjct 215 GGGTTCTTCTCAAAGTGATATTTGCTGGTGGGTTTCTTGGACCAGCAGGG-CATTTCTTT 273
Query 237 CATACATATCTAGATAAGTTTTTTAAAGGGAAGAAGGACACAAAGACTGTGGCAAAGAAG 296
||||||||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 274 CATACATATTTAGATAAGTTTTTTAAAGGGAAGAAGGATACACAGACTGTTGCAAAGAAG 333
Query 297 GTAGTTTTGGAACAACTGACATTGTCACCATTGAACCATTTGCTTTTCATGGTCTATTTT 356
||| || |||| ||| ||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 334 GTAATTCTGGAGCAATTGACATTGTCACCATTGAACCATTTGCTTTTCATGATCTATTAT 393
Query 357 GGAGTAGTCATCGAAAGAACTCCCTGGAATCTTGTTAGAGAAAGGATCAAGAAGACTTAT 416
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 394 GGAGTAGTCATAGAAAGAACTCCCTGGACCCTTGTTAGAGAAAGGATCAAGAAGACTTAT 453
Query 417 CCGACGGTCCAGCTTACAGCATGGACGTTTTTCCCGGTGGTGGGATGGATAAACTACAAG 476
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 454 CCAACGGTCCAGCTTACTGCATGGACGTTTTTCCCGGTGGTGGGATGGATTAACTACAAG 513
Query 477 TATGTGCCTCTCCACTTCCGAGTCATCTTGCACAGCCTTGTCGCGTTCTTTTGGGGAATT 536
|||||||| || |||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 514 TATGTGCCACTGCACTTCCGGGTCATCTTGCACAGCCTGGTCGCATTCTTTTGGGGAATT 573
Query 537 TTCCTGACCCTGCGAGCGAGGTCAATGACACTGGCTTTGGCAAAGGCTAAGTGATTAGGG 596
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 574 TTCCTAACCCTGCGAGCGAGGTCAATGACACTAGCTTTGGCAAAGGCTAAGTGATTAGG- 632
Query 597 AAACACATCGATCG 610
|||||||| |||||
Sbjct 633 AAACACATGGATCG 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29386975995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5