BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943231 Length=557 Score E Sequences producing significant alignments: (Bits) Value AT4G04614.1 | Symbols: | unknown protein; Has 35333 Blast hits... 765 0.0 > AT4G04614.1 | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:2327044-2328264 REVERSE LENGTH=889 Length=889 Score = 765 bits (414), Expect = 0.0 Identities = 522/569 (92%), Gaps = 27/569 (5%) Strand=Plus/Plus Query 10 AGAGTTCTTATCATGAAGAAAGGTATGATGC----GG-TG--G--gatgatgatgatgat 60 |||||| ||||||||||||||||| |||||| || || | ||||||||||||||| Sbjct 83 AGAGTTGTTATCATGAAGAAAGGTTTGATGCGATGGGATGATGATGATGATGATGATGAT 142 Query 61 ---gaCTCATCCGAGGAATCATCATCGTCTTCTGCTTCTGACTCAAATGTGGATGATAGT 117 ||||| || ||||||||||||||||||||||||||||| |||||||||||| | | | Sbjct 143 GAAGACTCTTCTGAGGAATCATCATCGTCTTCTGCTTCTGATTCAAATGTGGAT-A-A-T 199 Query 118 ACAGAGGCT--GG-gaagaagaagaagagaaagagcaagaagaCAATAGCGAGGTTTGCG 174 |||||| | || |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 200 ACAGAGATTGGGGAGAAGAAGAAGAAGAGAAAGAGCAAGAAGCCAATAGCGAGGTTTGCG 259 Query 175 AAGAAAGATAGGAAAGCTTTTGACTATGAATCTCTGCAACAGCATGGTTACAAAGCTGTT 234 |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 260 AAGAAAGATAAGAAAGCTTTTGACTATGAATCTCTGCAGCAGCATGGTTACAAAGCTGTT 319 Query 235 GGTCTTCCTGATATTCCTGCTCCCATGGAGAAACAGGATTGGTCATGGGCTACGGGAAAG 294 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 320 GGTCTTTCTGATATTCCTGCTCCCATGGAGAAACAGGATTGGTCATGGACTACGGGAAAG 379 Query 295 GATACAA-AAAGAGTAGAGGAAGTGAAAGAGAGTTAT-AGAGAACGAGAAGCTACAAGA- 351 |||| || |||||||||||||||||||||| |||||| | ||||||||||||||||||| Sbjct 380 GATA-AACAAAGAGTAGAGGAAGTGAAAGAAAGTTATCA-AGAACGAGAAGCTACAAGAG 437 Query 352 --GCTGCGGTTACAGGTGGTGAGACGATTGAGAATGCGCAGTTGCGGAATGATAGGAAGA 409 ||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 438 CTGCTGCGGTTACTGGTGGCGAGACGATTGCGAATGCGCAGTTGCGGAATGATAGGAAGA 497 Query 410 ATCTCTCTTTTTCACAGAAGgagaagaagaagagagatttgggacaagccagtagaggca 469 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 498 ATCTCTCTTTTTCACAGAAGGAGAAGAAGAAGAGAGATTTGGGACAAGCAAGTAGAGGCA 557 Query 470 agaattacgttgaagaagagaagagaCAGTTGAGAGAGAGTGGTGTTTACTCTGGTTTTG 529 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 558 AGAATTATGTTGAAGAAGAGAAGAGACAGTTGAGAGAGAGTGGTGTTTACTCTGGTTTTG 617 Query 530 ATTCTTAAAA-ATCTCAACTTTGAGGTAA 557 | |||||| | | |||||||||||||||| Sbjct 618 ACTCTTAAGAGA-CTCAACTTTGAGGTAA 645 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26724566204 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5