BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943231

Length=557
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04614.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   765    0.0  


> AT4G04614.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:2327044-2328264 
REVERSE LENGTH=889
Length=889

 Score =  765 bits (414),  Expect = 0.0
 Identities = 522/569 (92%), Gaps = 27/569 (5%)
 Strand=Plus/Plus

Query  10   AGAGTTCTTATCATGAAGAAAGGTATGATGC----GG-TG--G--gatgatgatgatgat  60
            |||||| ||||||||||||||||| ||||||    || ||  |  |||||||||||||||
Sbjct  83   AGAGTTGTTATCATGAAGAAAGGTTTGATGCGATGGGATGATGATGATGATGATGATGAT  142

Query  61   ---gaCTCATCCGAGGAATCATCATCGTCTTCTGCTTCTGACTCAAATGTGGATGATAGT  117
               ||||| || ||||||||||||||||||||||||||||| |||||||||||| | | |
Sbjct  143  GAAGACTCTTCTGAGGAATCATCATCGTCTTCTGCTTCTGATTCAAATGTGGAT-A-A-T  199

Query  118  ACAGAGGCT--GG-gaagaagaagaagagaaagagcaagaagaCAATAGCGAGGTTTGCG  174
            ||||||  |  || |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  200  ACAGAGATTGGGGAGAAGAAGAAGAAGAGAAAGAGCAAGAAGCCAATAGCGAGGTTTGCG  259

Query  175  AAGAAAGATAGGAAAGCTTTTGACTATGAATCTCTGCAACAGCATGGTTACAAAGCTGTT  234
            |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  260  AAGAAAGATAAGAAAGCTTTTGACTATGAATCTCTGCAGCAGCATGGTTACAAAGCTGTT  319

Query  235  GGTCTTCCTGATATTCCTGCTCCCATGGAGAAACAGGATTGGTCATGGGCTACGGGAAAG  294
            |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  320  GGTCTTTCTGATATTCCTGCTCCCATGGAGAAACAGGATTGGTCATGGACTACGGGAAAG  379

Query  295  GATACAA-AAAGAGTAGAGGAAGTGAAAGAGAGTTAT-AGAGAACGAGAAGCTACAAGA-  351
            |||| || |||||||||||||||||||||| |||||| | ||||||||||||||||||| 
Sbjct  380  GATA-AACAAAGAGTAGAGGAAGTGAAAGAAAGTTATCA-AGAACGAGAAGCTACAAGAG  437

Query  352  --GCTGCGGTTACAGGTGGTGAGACGATTGAGAATGCGCAGTTGCGGAATGATAGGAAGA  409
              ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct  438  CTGCTGCGGTTACTGGTGGCGAGACGATTGCGAATGCGCAGTTGCGGAATGATAGGAAGA  497

Query  410  ATCTCTCTTTTTCACAGAAGgagaagaagaagagagatttgggacaagccagtagaggca  469
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  498  ATCTCTCTTTTTCACAGAAGGAGAAGAAGAAGAGAGATTTGGGACAAGCAAGTAGAGGCA  557

Query  470  agaattacgttgaagaagagaagagaCAGTTGAGAGAGAGTGGTGTTTACTCTGGTTTTG  529
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  558  AGAATTATGTTGAAGAAGAGAAGAGACAGTTGAGAGAGAGTGGTGTTTACTCTGGTTTTG  617

Query  530  ATTCTTAAAA-ATCTCAACTTTGAGGTAA  557
            | |||||| | | ||||||||||||||||
Sbjct  618  ACTCTTAAGAGA-CTCAACTTTGAGGTAA  645



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26724566204


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5