BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943233
Length=406
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04620.1 | Symbols: ATG8B | Ubiquitin-like superfamily prote... 549 7e-156
AT4G21980.2 | Symbols: APG8A, ATG8A | Ubiquitin-like superfamil... 427 3e-119
AT1G62040.2 | Symbols: ATG8C | Ubiquitin-like superfamily prote... 331 3e-90
> AT4G04620.1 | Symbols: ATG8B | Ubiquitin-like superfamily protein
| chr4:2328496-2330200 REVERSE LENGTH=725
Length=725
Score = 549 bits (297), Expect = 7e-156
Identities = 345/369 (93%), Gaps = 0/369 (0%)
Strand=Plus/Plus
Query 3 AGATACTAATCGGATCGCCATGGCTAAGAACTCCTTCAAGCTTTCTAATCCTCTGGAGAT 62
||||||||| || ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 171 AGATACTAACCGAATCATCATGGAGAAGAACTCCTTCAAGCTTTCTAATCCTCTGGAGAT 230
Query 63 GAGAATGGCTGAATCTACTCGTATCAGAGCGAAATACCCAGACAGAGTTCCCGTGATTGT 122
|||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 231 GAGAATGGCTGAGTCTACTCGTATCAGAGCGAAATACCCTGAAAGAGTTCCCGTGATTGT 290
Query 123 GGAGAAGGCTGGACAGAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAGC 182
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GGAAAAAGCTGGACAGAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAGC 350
Query 183 TGATCTAACTGTTGGCCAGTTTGTGTACGTTGTGAGAAAAAGAATCAAGCTGGGAGCCGA 242
||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 351 TGATCTAACCATTGGCCAATTTGTGTACGTTGTGAGGAAAAGAATCAAGCTTGGAGCTGA 410
Query 243 AAAAGCCATCTTTGTCTTTGTCAAGAACACATTACCCCCAACTGCTGCACTGATGTCTGC 302
|||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 411 AAAAGCCATCTTTGTCTTTGTCAAGAACACATTACCACCAACTGCGGCATTGATGTCTGC 470
Query 303 AATATATGAGGAACACAAAGACGAAGATGGGTTTCTCTACATGACATACAGTGGAGAGAA 362
||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 471 AATCTACGAAGAACACAAAGACGAAGACGGGTTTCTCTACATGACATACAGTGGAGAGAA 530
Query 363 CACATTTGG 371
|||||||||
Sbjct 531 CACATTTGG 539
> AT4G21980.2 | Symbols: APG8A, ATG8A | Ubiquitin-like superfamily
protein | chr4:11655613-11657034 FORWARD LENGTH=894
Length=894
Score = 427 bits (231), Expect = 3e-119
Identities = 328/376 (87%), Gaps = 2/376 (1%)
Strand=Plus/Plus
Query 1 GCAGATACTAATCGGATCGCCATGGCTAAGAACTCCTTCAAGCTTTCTAATCCTCTGGAG 60
||||| |||||||| ||||| |||||||||| ||||||||| | ||||| ||||| |||
Sbjct 280 GCAGAGACTAATCGAATCGCAATGGCTAAGAGTTCCTTCAAGATCTCTAACCCTCTCGAG 339
Query 61 ATGAGAATG-GCTGAATCTACTCGTATCAGAGCGAAATACCCAGACAGAGTTCCCGTGAT 119
|| ||| | ||||||| |||| ||||||| ||| ||||| |||||| ||||||||||
Sbjct 340 GCAAGGATGAG-TGAATCTTCTCGAATCAGAGAGAAGTACCCTGACAGAATTCCCGTGAT 398
Query 120 TGTGGAGAAGGCTGGACAGAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACC 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 399 TGTGGAGAAGGCTGGACAAAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACC 458
Query 180 AGCTGATCTAACTGTTGGCCAGTTTGTGTACGTTGTGAGAAAAAGAATCAAGCTGGGAGC 239
|||||||||||| || || || ||||| ||||| || | |||||||||||||| |||||
Sbjct 459 AGCTGATCTAACAGTGGGACAATTTGTATACGTGGTTCGTAAAAGAATCAAGCTTGGAGC 518
Query 240 CGAAAAAGCCATCTTTGTCTTTGTCAAGAACACATTACCCCCAACTGCTGCACTGATGTC 299
|| ||||| || ||||||||||| ||||||||||| || |||||||||||| |||||||
Sbjct 519 TGAGAAAGCTATTTTTGTCTTTGTTAAGAACACATTGCCTCCAACTGCTGCATTGATGTC 578
Query 300 TGCAATATATGAGGAACACAAAGACGAAGATGGGTTTCTCTACATGACATACAGTGGAGA 359
||| || ||||| ||||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct 579 TGCGATCTATGAAGAACACAAAGATGAGGATGGGTTCCTCTACATGACTTACAGTGGAGA 638
Query 360 GAACACATTTGGATCT 375
|||||| |||||||||
Sbjct 639 GAACACTTTTGGATCT 654
> AT1G62040.2 | Symbols: ATG8C | Ubiquitin-like superfamily protein
| chr1:22932760-22934549 FORWARD LENGTH=720
Length=720
Score = 331 bits (179), Expect = 3e-90
Identities = 302/361 (84%), Gaps = 10/361 (3%)
Strand=Plus/Plus
Query 16 ATCGCCATGGCTAAGAACTCCTTCAAGCTTTCTA-ATCCTCTGGAGATGAGA-ATGGCTG 73
|||||||||||||| | ||| |||||| || | | || || |||| |||| | ||
Sbjct 59 ATCGCCATGGCTAATAGCTCTTTCAAG-TTGGAACACCCACTAGAGAGGAGACA-AATTG 116
Query 74 AATCTACTCGTATCAGAGCGAAATACCCAGACAGAGTTCCCGTGATTGTGGAGAAG-GCT 132
||||| |||| ||||| | ||| || ||||||||| |||| ||||| || ||| || |||
Sbjct 117 AATCTTCTCGCATCAGGGAGAAGTATCCAGACAGAATTCCAGTGATCGTAGAG-AGAGCT 175
Query 133 GGACAG-AGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAGCTGATCTAAC 191
|| || ||||||||||| | || |||||||||||||| ||||| ||||||||||||||
Sbjct 176 -GAAAGAAGTGATGTTCCCAATATCGACAAGAAGAAGTACCTTGTTCCAGCTGATCTAAC 234
Query 192 TGTTGGCCAGTTTGTGTACGTTGTGAGAAAAAGAATCAAGCTGGGAGCCGAAAAAGCCAT 251
|||||| || |||||||| ||||| | ||||||||||||||| | |||||||| || ||
Sbjct 235 TGTTGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGCTGAGTGCCGAAAAGGCTAT 294
Query 252 CTTTGTCTTTGTCAAGAACACATTACCCCCAACTGCTGCACTGATGTCTGCAATATATGA 311
||| |||||||| ||||||||||| || |||||||||||| ||||||||||||| |||||
Sbjct 295 CTTCGTCTTTGTGAAGAACACATTGCCTCCAACTGCTGCAATGATGTCTGCAATCTATGA 354
Query 312 GGA-ACACAAAGACGAAGATGGGTTTCTCTACATGACATACAGTGGAGAGAACACATTTG 370
|| | ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 355 TGAGA-ACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAGAACACCTTTG 413
Query 371 G 371
|
Sbjct 414 G 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19202280118
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5