BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943234

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04630.1 | Symbols:  | Protein of unknown function, DUF584 |...   856    0.0  
  AT1G11700.1 | Symbols:  | Protein of unknown function, DUF584 |...  58.4    7e-08


> AT4G04630.1 | Symbols:  | Protein of unknown function, DUF584 
| chr4:2331677-2332800 REVERSE LENGTH=1124
Length=1124

 Score =  856 bits (463),  Expect = 0.0
 Identities = 531/562 (94%), Gaps = 11/562 (2%)
 Strand=Plus/Plus

Query  1    TGGTGATTTGA--T-T-tctctctctct--cAATGGATTC---AGGATCAAGAAGAAGGA  51
            |||||||||||  | | |||||||||||  ||||||||||   |||||||||||||||||
Sbjct  100  TGGTGATTTGATTTCTCTCTCTCTCTCTCACAATGGATTCATTAGGATCAAGAAGAAGGA  159

Query  52   CACATAATAGCCGTCGGGTTCCTTCAATGAGAATAGAAGGGGAAGAAGAGTTTCAAGAAG  111
            |||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct  160  CACATAATAGCCGTAGGGTTCCTTCAATGGGAATAGAAGGGGACGAAGAGTTTCAAGAAG  219

Query  112  AAGATGTGTGGTCAGTTCTGA-GAGAAGGAGAAACTTCAGGTCCTGAAATGAAAATACCC  170
            ||||||||||||||||| | | ||||||||||||||||| ||||||||||||||||||||
Sbjct  220  AAGATGTGTGGTCAGTT-TTACGAGAAGGAGAAACTTCAAGTCCTGAAATGAAAATACCC  278

Query  171  AAAAGTCATTTCTCTTCCTCATCTTCTTCTTCATCTTCACCGTGGAACATTCATAGAAGC  230
            ||||||||||||||||||||||| |||||||| |||||||| |||||||||| |||||||
Sbjct  279  AAAAGTCATTTCTCTTCCTCATCATCTTCTTCCTCTTCACCATGGAACATTCGTAGAAGC  338

Query  231  AAGGAGGTCTCTGGAGTAAAACAGTCATCAGCACCTATGAATGTCCCTGATTGGTCCAAG  290
            ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  339  AAGGAGGTCTCAGGAGTGAAACAATCATCAGCACCTATGAATGTCCCTGATTGGTCCAAG  398

Query  291  GTTTATGGTGACTCAAAGAGCAACAGAAGGAGTAGCCATTTGCATTTTCATGATGCTAAC  350
            |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct  399  GTTTATGGTGACTCAAAGAGCAACAGAAGGAGTAGCCATTTGCATTCTCATGCTGCTGAC  458

Query  351  GATGATGAGGAAGATGATGATGGTTGCATGGTTCCTCCACATGAATGGGTTGCAAGAAAG  410
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  459  GATGATGATGAAGATGATGATGGTTGCATGGTTCCTCCACATGAATGGGTTGCAAGAAAG  518

Query  411  CTAGCAAGAACACAGATCTCTTCTTTCTCTATGTGTGAAGGAGTTGGAAGAACTCTTAAA  470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  519  CTAGCAAGAACACAGATCTCTTCTTTCTCTATGTGTGAAGGAGTTGGAAGAACACTTAAA  578

Query  471  GGAAGAGATCTAAGCAAAGTGAGAAATGCTGTCTTGACAAAAACTGGATTCTTGGAGTAA  530
            |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct  579  GGAAGAGATCTAAGCAAAGTGAGAAATGCTGTCTTGTCAAAAACTGGTTTCTTGGAGTAA  638

Query  531  GTAGGATATAATATCTCATCAT  552
            |||||||| |||||||||||||
Sbjct  639  GTAGGATAAAATATCTCATCAT  660


> AT1G11700.1 | Symbols:  | Protein of unknown function, DUF584 
| chr1:3945737-3946613 FORWARD LENGTH=877
Length=877

 Score = 58.4 bits (31),  Expect = 7e-08
 Identities = 35/37 (95%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  442  TGTGTGAAGGAGTTGGAAGAACTCTTAAAGGAAGAGA  478
            ||| |||||||||||||||||||||||||||| ||||
Sbjct  633  TGTTTGAAGGAGTTGGAAGAACTCTTAAAGGACGAGA  669



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5