BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943234 Length=552 Score E Sequences producing significant alignments: (Bits) Value AT4G04630.1 | Symbols: | Protein of unknown function, DUF584 |... 856 0.0 AT1G11700.1 | Symbols: | Protein of unknown function, DUF584 |... 58.4 7e-08 > AT4G04630.1 | Symbols: | Protein of unknown function, DUF584 | chr4:2331677-2332800 REVERSE LENGTH=1124 Length=1124 Score = 856 bits (463), Expect = 0.0 Identities = 531/562 (94%), Gaps = 11/562 (2%) Strand=Plus/Plus Query 1 TGGTGATTTGA--T-T-tctctctctct--cAATGGATTC---AGGATCAAGAAGAAGGA 51 ||||||||||| | | ||||||||||| |||||||||| ||||||||||||||||| Sbjct 100 TGGTGATTTGATTTCTCTCTCTCTCTCTCACAATGGATTCATTAGGATCAAGAAGAAGGA 159 Query 52 CACATAATAGCCGTCGGGTTCCTTCAATGAGAATAGAAGGGGAAGAAGAGTTTCAAGAAG 111 |||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 160 CACATAATAGCCGTAGGGTTCCTTCAATGGGAATAGAAGGGGACGAAGAGTTTCAAGAAG 219 Query 112 AAGATGTGTGGTCAGTTCTGA-GAGAAGGAGAAACTTCAGGTCCTGAAATGAAAATACCC 170 ||||||||||||||||| | | ||||||||||||||||| |||||||||||||||||||| Sbjct 220 AAGATGTGTGGTCAGTT-TTACGAGAAGGAGAAACTTCAAGTCCTGAAATGAAAATACCC 278 Query 171 AAAAGTCATTTCTCTTCCTCATCTTCTTCTTCATCTTCACCGTGGAACATTCATAGAAGC 230 ||||||||||||||||||||||| |||||||| |||||||| |||||||||| ||||||| Sbjct 279 AAAAGTCATTTCTCTTCCTCATCATCTTCTTCCTCTTCACCATGGAACATTCGTAGAAGC 338 Query 231 AAGGAGGTCTCTGGAGTAAAACAGTCATCAGCACCTATGAATGTCCCTGATTGGTCCAAG 290 ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 339 AAGGAGGTCTCAGGAGTGAAACAATCATCAGCACCTATGAATGTCCCTGATTGGTCCAAG 398 Query 291 GTTTATGGTGACTCAAAGAGCAACAGAAGGAGTAGCCATTTGCATTTTCATGATGCTAAC 350 |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || Sbjct 399 GTTTATGGTGACTCAAAGAGCAACAGAAGGAGTAGCCATTTGCATTCTCATGCTGCTGAC 458 Query 351 GATGATGAGGAAGATGATGATGGTTGCATGGTTCCTCCACATGAATGGGTTGCAAGAAAG 410 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 459 GATGATGATGAAGATGATGATGGTTGCATGGTTCCTCCACATGAATGGGTTGCAAGAAAG 518 Query 411 CTAGCAAGAACACAGATCTCTTCTTTCTCTATGTGTGAAGGAGTTGGAAGAACTCTTAAA 470 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 519 CTAGCAAGAACACAGATCTCTTCTTTCTCTATGTGTGAAGGAGTTGGAAGAACACTTAAA 578 Query 471 GGAAGAGATCTAAGCAAAGTGAGAAATGCTGTCTTGACAAAAACTGGATTCTTGGAGTAA 530 |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 579 GGAAGAGATCTAAGCAAAGTGAGAAATGCTGTCTTGTCAAAAACTGGTTTCTTGGAGTAA 638 Query 531 GTAGGATATAATATCTCATCAT 552 |||||||| ||||||||||||| Sbjct 639 GTAGGATAAAATATCTCATCAT 660 > AT1G11700.1 | Symbols: | Protein of unknown function, DUF584 | chr1:3945737-3946613 FORWARD LENGTH=877 Length=877 Score = 58.4 bits (31), Expect = 7e-08 Identities = 35/37 (95%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 442 TGTGTGAAGGAGTTGGAAGAACTCTTAAAGGAAGAGA 478 ||| |||||||||||||||||||||||||||| |||| Sbjct 633 TGTTTGAAGGAGTTGGAAGAACTCTTAAAGGACGAGA 669 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26473395469 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5