BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943235
Length=1208
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04640.1 | Symbols: ATPC1 | ATPase, F1 complex, gamma subuni... 1916 0.0
AT1G15700.1 | Symbols: ATPC2 | ATPase, F1 complex, gamma subuni... 250 2e-65
> AT4G04640.1 | Symbols: ATPC1 | ATPase, F1 complex, gamma subunit
protein | chr4:2350498-2352018 REVERSE LENGTH=1521
Length=1521
Score = 1916 bits (1037), Expect = 0.0
Identities = 1154/1209 (95%), Gaps = 13/1209 (1%)
Strand=Plus/Plus
Query 1 GCAAAACACTGTCTGAAACAAACATC-AAAAAATGGCTTGCTCTAATCTAACTACAATGT 59
|||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||
Sbjct 105 GCAAAACACTGTCTGAAACAAACAACAAAAAAATGGCTTGCTCTAATCTAACAACAATGT 164
Query 60 GGGTTTCATCAAAACCATCTCTTTCTGCTGATTCATCTTCCTTATCTTTCCGATCTGTTC 119
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 165 GGGTTTCATCAAAACCATCTCTTTCTGCTGATTCATCTTCCTTATCATTCCGATCTGTTC 224
Query 120 TCAAGTGCCCAGTTCCTCTCCCAAATTACACTTCCTCTCCACCTTCAAGATCATCCTCTG 179
||||||||||| || | |||||||||| || |||||| || | |||||||
Sbjct 225 TCAAGTGCCCA-----ACT-----A--ACACTTCCTCACCTCCTTCACGAGCTTCCTCTG 272
Query 180 TTTCACCACTCCAAGCGTCTCTTCGTGAGCTCAGAGACCGTATCGATTCAGTCAAAAACA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TTTCACCACTCCAAGCGTCTCTTCGTGAGCTCAGAGACCGTATCGATTCAGTCAAAAACA 332
Query 240 CTCAGAAGATCACCGAAGCTATGAAGCTTGTCGCTGCAGCTAAAGTCAGGAGAGCTCAAG 299
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 CTCAAAAGATCACCGAAGCTATGAAGCTTGTCGCTGCAGCTAAAGTCAGGAGAGCTCAAG 392
Query 300 AAGCTGTCGTCAATGGCCGACCTTTCTCAGAAACCCTAGTTGAAGTTCTTTACAACATCA 359
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 393 AAGCTGTTGTCAATGGACGACCATTCTCAGAAACCCTAGTTGAAGTTCTTTACAACATCA 452
Query 360 ACGAACAGCTTCAAACCGATGATGTCGATGTCCCCTTAACCAAAGTCAGACCGGTTAAGA 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 453 ACGAACAGCTTCAAACCGATGATGTCGATGTTCCCTTAACCAAAGTCAGACCGGTTAAGA 512
Query 420 AAGTAGCACTCGTTGTCGTAACCGGTGATCGTGGATTATGTGGTGGATTCAACAATTTCA 479
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 513 AAGTAGCTCTCGTTGTCGTCACCGGTGATCGTGGATTATGTGGTGGATTCAACAATTTCA 572
Query 480 TCATCAAGAAAGCAGAGGCAAGAATCAAAGAGCTTAAAGGTCTTGGTCTTGATTACACAG 539
|||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 573 TCATTAAGAAAGCAGAGGCAAGAATCAAAGAGCTTAAAGGTCTAGGTCTTGAATACACAG 632
Query 540 TCATTAGCGTGGGGAAGAAGGGAAATTCTTATTTCCTCCGTCGTCCGTACATACCCGTCG 599
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 633 TCATTAGCGTGGGCAAGAAGGGAAATTCTTATTTCCTCCGTCGCCCGTACATCCCCGTCG 692
Query 600 ACAGATACCTCGAAGCCGGAACTTTACCTACGGCTAAAGAAGCTCAAGCTGTGGCTGATG 659
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 ACAAATACCTAGAAGCCGGAACTTTACCTACGGCTAAAGAAGCTCAAGCTGTGGCTGATG 752
Query 660 ATGTCTTCTCTCTGTTTATAAGCGAAGAAGTCGATAAAGTCGAGCTCTTGTACACAAAGT 719
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 753 ATGTCTTCTCTCTGTTTATAAGTGAAGAAGTCGACAAAGTCGAGCTCTTGTACACAAAGT 812
Query 720 TTGTGTCTTTGGTCAAATCAGAACCCGTGATCCACACGCTATTGCCTCTATCACCTAAAG 779
|||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 813 TTGTCTCTTTGGTCAAATCAGAACCCGTGATCCACACGCTACTGCCTTTATCACCTAAAG 872
Query 780 GAGAGATCTGTGACATTAATGGGACCTGTGTTGATGCTGCGGAAGATGAATTGTTCAGGC 839
|||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||
Sbjct 873 GAGAGATCTGTGACATTAATGGAACCTGTGTGGATGCTGCGGAAGATGAGTTTTTCAGGT 932
Query 840 TAACGACGAAAGGAGGGAAATTGACGGTTGAAAGAGAGACTTTTAGGACACCAACAGCTG 899
||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 933 TAACGACAAAAGAAGGGAAATTGACAGTTGAAAGAGAGACTTTTAGGACACCAACAGCTG 992
Query 900 ATTTCTCGCCGATCTTGCAATTCGAGCAAGACCCTGTTCAGATTCTTGATGCTTTGTTGC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 ATTTCTCGCCGATCTTGCAATTCGAGCAAGACCCTGTTCAGATTCTTGATGCTTTGTTGC 1052
Query 960 CTCTGTATCTGAACAGTCAGATTCTTAGGGCATTACAGGAGTCATTGGCTAGTGAGCTTG 1019
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 CTCTGTATCTTAACAGTCAGATTCTTAGGGCATTACAGGAGTCATTGGCTAGTGAGCTTG 1112
Query 1020 CAGCTAGAATGAGTGCAATGAGTAGTGCTTCGGATAATGCATCGGATCTTAAGAAATCGC 1079
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1113 CAGCTAGAATGAGTGCAATGAGTAGTGCTTCGGATAATGCATCGGATCTCAAGAAATCGC 1172
Query 1080 TTTCCATGGTGTATAATAGAAAGCGTCAAGCTAAGATTACTGGAGAGATTCTTGAGATTG 1139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TTTCGATGGTGTATAATAGAAAGCGTCAAGCTAAGATTACTGGAGAGATTCTTGAGATTG 1232
Query 1140 TTGCTGGAGCTAATGCACAGGTTTGATTTGTTTTCAACCCTCTTTGAATCTTTTATATGA 1199
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1233 TTGCTGGAGCTAATGCACAGGTTTGATTTGTTTTGAACCCTCTTTGAATCTTCTATATGA 1292
Query 1200 GTCCAAAAC 1208
|||||||||
Sbjct 1293 GTCCAAAAC 1301
> AT1G15700.1 | Symbols: ATPC2 | ATPase, F1 complex, gamma subunit
protein | chr1:5402569-5403818 REVERSE LENGTH=1250
Length=1250
Score = 250 bits (135), Expect = 2e-65
Identities = 418/549 (76%), Gaps = 42/549 (8%)
Strand=Plus/Plus
Query 622 TTTACCTACGGCTAAAGAAGCTCAAGCTGTGGCTGATGATGTCTTCT-CTCTGTTTATAA 680
||| || ||| ||||||||||||||| | | || |||||||| || | || ||||| | |
Sbjct 641 TTTCCCAACGACTAAAGAAGCTCAAGTTATTGCAGATGATGTGTTTTCCT-TGTTTGTCA 699
Query 681 GCGAAGAAGTCGATAAAGTCGAGC-TCTTGTACACAAAGTTTGTGTCTTTGGTCAAATCA 739
| ||||| || |||||||| |||| | || ||||||||||||||||||||||| |||||
Sbjct 700 GTGAAGAGGTTGATAAAGTTGAGCTTGTT-TACACAAAGTTTGTGTCTTTGGTGAAATCT 758
Query 740 GAACCCGTGATCCACACGCTATTGCCTCTATCACCT-AAAGGAGAGATC-TGTGACATTA 797
|| || ||||||||||| || |||||| | || | ||||||||| || ||||| | |
Sbjct 759 GATCCTGTGATCCACACTCTGTTGCCTTTGTC-GATGAAAGGAGAG-TCTTGTGATGTGA 816
Query 798 ATGG-GACCTGTGTTGATGCT-GCGGAAGATGA-ATTGTTCAGGCTAACGACG-AAAGGA 853
| || || |||||||||||| | || ||||| | |||| |||||||||| | ||| ||
Sbjct 817 AAGGTGA-GTGTGTTGATGCTATC-GAGGATGAGA-TGTTTAGGCTAACGA-GCAAA-GA 871
Query 854 -GGGAAATTGA-CGGTTGAAA-GA--GAGACTTTTAG--GACACCAACAGCTGATTTCTC 906
||||| || | | || |||| || || ||| || || | | | |||| ||||
Sbjct 872 TGGGAAGTT-AGCTGTGGAAAGGACCAAG-CTTGAAGTTGAGA--AGC--CTGAGATCTC 925
Query 907 GCCGATCTTGCAATTCGAGCAAGACCCTGTTCAGATTCTTGATGCTTTGTTGCCTCTGTA 966
||| | |||| || ||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 926 ACCGTTGATGCAGTTTGAGCAAGACCCTGTTCAGATTCTTGATGCAATGATGCCTTTGTA 985
Query 967 TCTGAACAGTCAGATTCTTAGGGCATTACAGGAGTCATTGGCTAGTGAGCTTGCAG-CTA 1025
||| |||||||||||||| || ||| | ||||| || || || ||||||||||| | | |
Sbjct 986 TCTCAACAGTCAGATTCTAAGAGCACTGCAGGAATCTTTAGCGAGTGAGCTTGC-GTCGA 1044
Query 1026 GAATGAGTGCAATGAGTAGTGCTTCGGATAATGCA-TCGGATCTTAAGAA-A-TCGCTTT 1082
| |||| ||| ||||||| ||| | |||||||| | | || | ||||| | || |
Sbjct 1045 GGATGAATGCGATGAGTAATGCGACTGATAATGCGGTTGAAT-TGAAGAAGAATC--TGA 1101
Query 1083 CCATGG-TGTATAATAGAAAGCGTCAAGCTAAGATTACTGGAGAGATT-CTTGAGATTGT 1140
| |||| | ||||| || | | || |||||||| ||||| ||| || || ||||||||
Sbjct 1102 CGATGGCT-TATAACCGAGCGAGACAGGCTAAGATCACTGGGGAG-TTGCTGGAGATTGT 1159
Query 1141 TGCTGGAGC 1149
||||||||
Sbjct 1160 GGCTGGAGC 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59337044190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5