BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943240 Length=1234 Score E Sequences producing significant alignments: (Bits) Value AT4G04693.1 | Symbols: | pseudogene, hypothetical protein | ch... 403 2e-111 > AT4G04693.1 | Symbols: | pseudogene, hypothetical protein | chr4:2379440-2380744 FORWARD LENGTH=1305 Length=1305 Score = 403 bits (218), Expect = 2e-111 Identities = 265/288 (92%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 815 ATGGAGGAGAACGTGCGATCAGGGTTTGGAGGCTGGTGTCTACGAATGAGAATCTTAATT 874 |||||||||||||||| || ||||||||||||||||| |||||||||||| ||||||||| Sbjct 1 ATGGAGGAGAACGTGCAATTAGGGTTTGGAGGCTGGTCTCTACGAATGAGCATCTTAATT 60 Query 875 CATGGCAACTCTCATGGAAAGTCAATACCAAGGGTGACGTTGATTATTTCCCTGTGGTCA 934 ||||||||||||||||||| |||||||| |||||||| ||||||||||||| ||||||| Sbjct 61 CATGGCAACTCTCATGGAACGTCAATACAAAGGGTGAGGTTGATTATTTCCAAGTGGTCA 120 Query 935 TGCATCCTATAAATTTTGATG--TCATTTACCTGTGGAGTTGGAACAAGAACGCCCTCGT 992 ||||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||||| Sbjct 121 TGCATCCTATAAACTTTGATGAATTATTTACCTGTGAAGTTGGAACAAGAACGCCCTCGT 180 Query 993 CTTGTTTAATTTGAGGACACAAAAGTATAGTCTTCGCAGAGAGGCAAAGAAGAGCAAGTC 1052 ||||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||| Sbjct 181 CTTGTTTAATTTGAGGACACAAACGTCTAGTCTTCACAGAGAGGGAAAGAAGAGCAAGTC 240 Query 1053 TATGGATGGTTGCATCTTGACATTCAGCAACTGCAAGGAGTATATGGA 1100 |||||||||||||||||||||||||| ||| || || ||||| ||||| Sbjct 241 TATGGATGGTTGCATCTTGACATTCAACAATTGTAAAGAGTACATGGA 288 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60642258360 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5