BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943240

Length=1234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04693.1 | Symbols:  | pseudogene, hypothetical protein | ch...   403    2e-111


> AT4G04693.1 | Symbols:  | pseudogene, hypothetical protein | 
chr4:2379440-2380744 FORWARD LENGTH=1305
Length=1305

 Score =  403 bits (218),  Expect = 2e-111
 Identities = 265/288 (92%), Gaps = 2/288 (1%)
 Strand=Plus/Plus

Query  815   ATGGAGGAGAACGTGCGATCAGGGTTTGGAGGCTGGTGTCTACGAATGAGAATCTTAATT  874
             |||||||||||||||| || ||||||||||||||||| |||||||||||| |||||||||
Sbjct  1     ATGGAGGAGAACGTGCAATTAGGGTTTGGAGGCTGGTCTCTACGAATGAGCATCTTAATT  60

Query  875   CATGGCAACTCTCATGGAAAGTCAATACCAAGGGTGACGTTGATTATTTCCCTGTGGTCA  934
             ||||||||||||||||||| |||||||| |||||||| |||||||||||||  |||||||
Sbjct  61    CATGGCAACTCTCATGGAACGTCAATACAAAGGGTGAGGTTGATTATTTCCAAGTGGTCA  120

Query  935   TGCATCCTATAAATTTTGATG--TCATTTACCTGTGGAGTTGGAACAAGAACGCCCTCGT  992
             ||||||||||||| |||||||  | ||||||||||| |||||||||||||||||||||||
Sbjct  121   TGCATCCTATAAACTTTGATGAATTATTTACCTGTGAAGTTGGAACAAGAACGCCCTCGT  180

Query  993   CTTGTTTAATTTGAGGACACAAAAGTATAGTCTTCGCAGAGAGGCAAAGAAGAGCAAGTC  1052
             ||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||||
Sbjct  181   CTTGTTTAATTTGAGGACACAAACGTCTAGTCTTCACAGAGAGGGAAAGAAGAGCAAGTC  240

Query  1053  TATGGATGGTTGCATCTTGACATTCAGCAACTGCAAGGAGTATATGGA  1100
             |||||||||||||||||||||||||| ||| || || ||||| |||||
Sbjct  241   TATGGATGGTTGCATCTTGACATTCAACAATTGTAAAGAGTACATGGA  288



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 60642258360


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5