BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943255
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04840.1 | Symbols: ATMSRB6, MSRB6 | methionine sulfoxide re... 675 0.0
> AT4G04840.1 | Symbols: ATMSRB6, MSRB6 | methionine sulfoxide
reductase B6 | chr4:2449560-2451589 FORWARD LENGTH=848
Length=848
Score = 675 bits (365), Expect = 0.0
Identities = 422/450 (94%), Gaps = 2/450 (0%)
Strand=Plus/Plus
Query 20 AAATGGAAATGACGGCAGCTCCGGAAGGTGGTTTGATCAAAAAGTCCAACGAGGAGTGGC 79
||||||||| || ||| ||||| |||| |||| |||||||||||||||||||||||||||
Sbjct 134 AAATGGAAACGAAGGCGGCTCCTGAAGCTGGTATGATCAAAAAGTCCAACGAGGAGTGGC 193
Query 80 GTGCGGTTCTATCTCCTGAACAGTTTAAGATTCTTAGGGAGAAAGCTATTGAGAAGAGAG 139
|| |||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||
Sbjct 194 GTACGGTTCTATCTCCTGAACAGTTTAAGATTCTTAGAGAGAAATCTATTGAAAAGAGAG 253
Query 140 GGTCAGGAGAGTATGTGAAGTTGTTCGAGGACGGAATCTACTGTTGTGTTGGTTGTGGCA 199
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 254 GGTCAGGAGAATATGTGAAGTTGTTCGAGGAAGGAATCTACTGTTGTGTTGGTTGTGGAA 313
Query 200 ATCCGGTTTATAAATCAACCACTAAATTCGATTCCGGTTGCGGTTGGCCTGCGTTTTTCG 259
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 314 ATCCGGTTTATAAATCAACCACTAAATTCGATTCCGGTTGCGGTTGGCCGGCTTTTTTTG 373
Query 260 ATGCTATTCCCGGCGCCATTAACCGAACCGAGGAGAGAGCTGGATTAAGATATGAGATCA 319
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 374 ATGCTATTCCTGGCGCCATTAACCGAACCGAGGAGAGAGCTGGATTAAGATATGAGATAA 433
Query 320 CTTGCACAAAATGTGATGGACATCTTGGCCATGTCTTAAAAAATGAAGGTTTTCCAACAC 379
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 434 CTTGCACAAAATGTGATGGACATCTAGGTCATGTCTTAAAAAATGAAGGTTTTCCAACAC 493
Query 380 CAACTGACGAACGCCATTGCATCAACAGCGTTGCACTCAAGTTCTCTTCCGCGATTC-CG 438
|||||||||||||||||||| ||||||||||||| ||||||||||||||||| || | |
Sbjct 494 CAACTGACGAACGCCATTGCGTCAACAGCGTTGCTCTCAAGTTCTCTTCCGCTAT-CACA 552
Query 439 TCTCAGTGATAAACCGATCCGGTTTCGTTC 468
|||||||||||||| |||||||||| ||||
Sbjct 553 TCTCAGTGATAAACGGATCCGGTTTAGTTC 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22253727121
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5