BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943260
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04880.1 | Symbols: | adenosine/AMP deaminase family protei... 1679 0.0
> AT4G04880.1 | Symbols: | adenosine/AMP deaminase family protein
| chr4:2464859-2467166 REVERSE LENGTH=1327
Length=1327
Score = 1679 bits (909), Expect = 0.0
Identities = 1031/1091 (95%), Gaps = 3/1091 (0%)
Strand=Plus/Plus
Query 1 TCTTTTGGAGaaaaaaaaaaaTGGAATGGATAAAATCAATGCCCAAAATCGAGCTTCATG 60
|||| |||| ||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 45 TCTTCTGGA-CAAAAAAAAAATGGAATGGATACAATCACTGCCCAAAATCGAGCTTCATG 103
Query 61 CTCATCTCAATGGCTCCATTAGAGACTCCACTCTTCTAGAGCTTGCTAGGGTTCTTGGTG 120
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 CTCATCTCAACGGTTCCATTAGAGACTCCACTCTTCTAGAGCTTGCTAGGGTTCTTGGTG 163
Query 121 AGAAAGGTGTTATAGTGTTTGCTGATGTTGAACATGTCATTCGAAAAAATGATCGATCTT 180
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 164 AGAAAGGCGTTATAGTGTTTGCTGATGTTGAACATGTCATTCAAAAAAATGATCGATCTT 223
Query 181 TGGTTGAAGTCTTCAAGTTGTTTGATTTGATCCATAAGCTCACTACTGATCACAAAACCG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 224 TGGTTGAAGTCTTCAAGTTGTTTGATTTGATCCATAAGCTCACTACTGATCACAAAACTG 283
Query 241 TGACAAGGATCACTAGAGAAGTTGTAGAAGATTTTGCTTTAGAGAATGTGGTGTATCTCG 300
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 284 TGACAAGGATCACAAGAGAAGTTGTGGAAGATTTTGCTTTAGAGAATGTGGTGTATCTTG 343
Query 301 AGTTAAGAACAACTCCAAAGAGGAATGATTCGATAGGTATGAGTAAACGGTCTTACATGG 360
||||| |||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||
Sbjct 344 AGTTACGAACTACTCCAAAGAGGAGTGATTCAATAGGTATGAGTAAACGTTCTTACATGG 403
Query 361 ATGCGGTTATTGAAGGTCTGAGATCTGTCAGTGAAGTCGATATTGAATTTGTTACGGCAT 420
| || || || ||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 404 AAGCTGTAATCCAAGGTCTAAGATCTGTCAGTGAAGTCGATATTGATTTTGTTACCGCAT 463
Query 421 CTGATTCTCAAAAACTGCTCAATGCGTG-TGATGGAATTGGAAGAAAGAAGATTTATGTT 479
|||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||
Sbjct 464 CTGATTCTCAAAAACTGCACAATGC-TGGTGATGGGATTGGAAGAAAGAAGATTTATGTT 522
Query 480 AGACTTCTTCTTAGTATTGATCGTAGAGAAACAACCGAGTCCGCAATGGAAACTGTTAAG 539
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 523 AGACTTCTTCTTAGTATTGATCGTAGGGAAACAACAGAGTCCGCAATGGAAACTGTTAAG 582
Query 540 CTCGCATTGGAAATGAGAGATGTCGGGGTTGTTGGTATCGATCTTTCAGGGAATCCTCTT 599
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 583 CTCGCATTGGAAATGAGAGATGTCGGGGTAGTTGGTATCGATCTTTCGGGGAATCCTCTT 642
Query 600 GTTGGAGAATGGAGCACTTTCTTGCCTGCATTACAATTTGCCAAAGACAATGATCTTCAC 659
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 643 GTTGGAGAATGGAGCACTTTCTTGCCTGCATTACAATATGCCAAAGACAATGATCTTCAC 702
Query 660 ATCACTCTTCACTGTGGAGAGGTCCCCAATCCAAAAGAAATCCAAGCCATGCTTGATTTC 719
||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 703 ATCACTCTTCACTGTGGAGAGGTTCCCAATCCGAAAGAGATCCAAGCCATGCTTGATTTT 762
Query 720 AAACCGCATCGAATTGGCCATGCCTGTTTCTTCAAAGATGAAGATTGGTCAAAGTTGAAA 779
||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||
Sbjct 763 AAACCGCATCGGATTGGACATGCCTGTTTCTTCAAAGACGAAGATTGGACAAAGTTGAAA 822
Query 780 TCTTTCCGGATTCCGGTTGAAATATGTCTAACATCCAACATCATAACCAAATCGATATCT 839
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 823 TCTTTCCGGATTCCGGTTGAAATATGTTTAACATCCAACATTGTAACCAAATCGATATCT 882
Query 840 TCCATCGATATCCACCATTTCGCTGATCTCTACAATGCAAAGCATCCATTGATTCTATGC 899
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 883 TCCATCGATATACACCATTTCGCTGATCTTTACAATGCAAAGCATCCATTGATTCTATGC 942
Query 900 ACTGATGATTTTGGAGTATTCTCCACTAGCCTCTCCAATGAGTACGCTCTCGCTGTTCGT 959
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 943 ACTGATGATTTTGGAGTATTCTCCACTAGCCTCTCCAACGAGTACGCCCTCGCTGTTCGT 1002
Query 960 TCTTTTGGTCTTAGTAAAAGAGAAACCTTTGCATTGGCTAGAACCGCAATAGACGCAACG 1019
||| |||||||||||||||| ||||||||||||||||||||| | || |||||||||||
Sbjct 1003 TCTCTTGGTCTTAGTAAAAGTGAAACCTTTGCATTGGCTAGAGCAGCCATAGACGCAACA 1062
Query 1020 TTTGCAGAAGATGAAGTTAAGCAACAACTTAGGTTGATTTTTGATTCAGCCTCGCCAGAG 1079
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1063 TTTGCAGAAGATGAAGTTAAGCAACAACTTAGGTTCATTTTTGATTCAGCCTCGCCAGAG 1122
Query 1080 TATGCTTAGTG 1090
| | ||||||
Sbjct 1123 CACGTTTAGTG 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5