BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943265
Length=2231
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04910.1 | Symbols: NSF | AAA-type ATPase family protein | c... 3216 0.0
> AT4G04910.1 | Symbols: NSF | AAA-type ATPase family protein |
chr4:2489417-2495766 REVERSE LENGTH=2608
Length=2608
Score = 3216 bits (1741), Expect = 0.0
Identities = 1938/2035 (95%), Gaps = 6/2035 (0%)
Strand=Plus/Plus
Query 176 CATCCGTGATGGAAACATTGCTCTCAATGCTATTCAAAGGCGGCATGCTAGAGTTTCGAC 235
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 289 CATCCGTGATGGAAATATTGCTCTCAATGCTATTCAAAGGCGACACGCTAGAGTTTCGAC 348
Query 236 TGGTGATATGGTATCTGTTAGCAGATTTGTTCCTCCAGAAAATTTTGATCTGGCTATGCT 295
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 349 TGGTGATATGGTATCTGTTAGCAGATTTGTTCCTCCTGAAAATTTTGATCTGGCTATGCT 408
Query 296 GACGCTTGAGTTAGAATTTGTAAAGAAGGGGACTAAAAGCGAGCAGGTTGATGCTGCTCT 355
|||||| ||||| |||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 409 GACGCTGGAGTTGGAATTTGTGAAGAAAGGAACTAAAAGCGAGCAGGTTGATGCTGCTCT 468
Query 356 TCTTTCAACCCAACTTAAGAGGAAATACACCAACCAGGTCTTGACTGTAGGCCAGAAAGC 415
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 CCTTTCGACCCAGCTTAAGAGGAAATACACCAACCAGGTCTTGACTGTAGGCCAGAAAGC 528
Query 416 GACATTTGAGTATCATGGAACTAATTACATTCTTACGGTCAATCGAGCGGATGTAGAGGG 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 529 GACATTTGAGTATCATGGAACTAATTACATTCTTACGGTCAATCGAGCGGATGTTGAGGG 588
Query 476 TCAGGATCACTCGAATGGCATCGAAAGAGGGTTGCTCTCTAAAGATACATATATTGTGTT 535
|||||||||| |||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 589 TCAGGATCACACGAACGGCATTGAAAGAGGGTTGCTCTCTAAAGACACGTATATTGTGTT 648
Query 536 TGAAGCATCAAACT-CAAGTGGTATAAAGATTGTCAACCAACGGGAAGCTGCTAGCAGCA 594
|||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 649 TGAAGCATCAAA-TGCAAGTGGCATAAAGATTGTCAACCAACGGGAAGCTGCTAGCAGCA 707
Query 595 ATATATTTAAACATAAGGAATTTAACCTTGAGTCGCTGGGCATAGGTGGTCTGGGTGCAG 654
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 708 ATATATTCAAACATAAGGAATTTAACCTTGAGTCGCTGGGAATAGGTGGTCTTGGTGCAG 767
Query 655 AGTTTGCTGATATATTTAGAAGAGCTTTTGCTTCTCGTGTATTTCCTCCTCATGTCACCA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 AGTTTGCTGATATATTTAGAAGAGCTTTTGCTTCTCGTGTATTTCCTCCTCATGTCACCA 827
Query 715 ACAGATTGGGAATAAAGCATGTTAAAGGGATGCTTCTTTTTGGACCTCCTGGTACTGGCA 774
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 GCAGACTGGGAATAAAGCATGTTAAAGGGATGCTTCTTTTTGGACCTCCTGGTACTGGCA 887
Query 775 AAACCCTTATGGCACGGCAGATTGGAAAGATGCTTAATGGAAAGGATCCAAAGATTGTTA 834
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 888 AAACCCTTATGGCACGGCAAATTGGAAAGATGCTTAATGGAAAGGATCCAAAGATCGTTA 947
Query 835 ATGGTCCTGAGGTGCTGAGCAAGTTTGTTGGTGAGACAGAAAAGAATGTAAGAGACTTAT 894
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 ATGGGCCTGAGGTGCTGAGCAAGTTTGTTGGTGAGACAGAAAAGAATGTAAGAGACTTAT 1007
Query 895 TTGCTGATGCTGAGCAAGACCAGAGGACCCTTGGTGATGCTAGTGAGTTGCATGTCATTA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TTGCTGATGCTGAGCAAGACCAGAGGACCCTTGGTGATGCTAGTGAGTTGCATGTCATTA 1067
Query 955 TCTTTGATGAGATTGATGCAATTTGTAAGTCAAGAGGCTCAACCAGAGATGGCACAGGTG 1014
| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1068 TTTTTGATGAGATTGATGCTATTTGCAAGTCAAGAGGTTCAACCAGAGATGGCACAGGTG 1127
Query 1015 TCCATGATAGTATCGTAAACCAGCTTTTGACAAAGATAGATGGTGTGGAGGCCTTGAACA 1074
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1128 TCCATGATAGTATTGTAAACCAGCTTTTGACAAAGATAGATGGTGTGGAGGCCTTAAACA 1187
Query 1075 ATGTTTTGCTGATTGGAATGACAAACAGAAAGGATTTGCTTGATGAAGCTCTTTTAAGGC 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 ATGTTTTGCTGATTGGAATGACAAACAGAAAGGATTTGCTTGATGAAGCTCTTTTAAGGC 1247
Query 1135 CTGGAAGATTGGAGGTTCAGGTTGAGATAAGCCTTCCTGATGAAGCTGGGCGTCTACAAA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 CTGGAAGATTGGAGGTTCAGGTTGAGATAAGCCTTCCTGATGAAGCTGGGCGTCTACAAA 1307
Query 1195 TTCTTCAGATTCATACAAATAAGATGAAGGAAAATTCTTTCCTTGGTACTGATATCAATC 1254
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1308 TTCTTCAGATTCATACAAATAAGATGAAGGAAAATTCTTTCCTTGGGACTGATATCAATC 1367
Query 1255 TCCAAGAGCTTGCTGCTCGAACAAAAAATTACAGTGGTGCAGAGCTTGAAGGTGTTGTTA 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 TCCAAGAGCTTGCTGCTCGAACAAAAAATTACAGTGGTGCAGAGCTTGAAGGTGTTGTTA 1427
Query 1315 AAAGTGCTACATCATATGCATTAAACAGACAACTAAGCATGGATGATCTTACAAAGCCAG 1374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1428 AAAGTGCTACATCATATGCATTAAACAGACAACTAAGCATGGATGATCTTACAAAGCCTG 1487
Query 1375 TGGAAGAAGAGAATATCAAGATCACTATGGAGGATTTTCTCCACGCTATCTATGAAGTTC 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 TGGAAGAAGAGAATATCAAGATCACTATGGAGGATTTTCTCCACGCTATCTATGAAGTTC 1547
Query 1435 AACCTGCATTTGGAGCCTCCACAGATGACCTGGAGCGCTGCAGACTCAATGGGATGGTGG 1494
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1548 AACCTGCATTTGGAGCCTCCACAGATGACCTAGAGCGCTGCAGACTCAATGGGATGGTAG 1607
Query 1495 ATTCTGGTGATCGACATAATCACATTTACAAAAGAGCTATGCTTCTAGTCGAACAAGTTA 1554
||| |||| |||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1608 ATTGTGGTCATCGGCATAATCACATTTACAAAAGAGCTATGCTTCTAGTCGAGCAAGTTA 1667
Query 1555 AAGTTAGTACTAGAAGTCCTCTAGTCACTTGCCTTCTGGAGGGGCCCAGTGGAAGTGGGA 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 AAGTTAGTACTAGAAGTCCTCTAGTCACTTGCCTTCTGGAGGGGCCCAGTGGAAGTGGGA 1727
Query 1615 AAACTGCTTTGGCTGCAACTGTTGGTATCGATAGTGACTTCCCATATGTTAAGATAGTCT 1674
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1728 AAACTGCTTTAGCAGCAACAATTGGTATCGATAGTGACTTCCCATATGTTAAGATAGTTT 1787
Query 1675 CTGCCGAAACAATGATCGGTCTTTCTGAGAGCACAAAATGTGCTCACATCGTCAAGGTCT 1734
|||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1788 CTGCGGAAACTATGATTGGTCTTTCTGAGAGCACAAAATGTGCTCACATTGTCAAGGTCT 1847
Query 1735 TTGAGGATGCGTATAAATCACCAATGAGCATCATTATTCTTGATGATATTGAAAGATTGT 1794
|||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1848 TTGAGGATGCATATAAATCTCCAATGAGCATCATTATCCTTGACGATATTGAAAGATTGT 1907
Query 1795 TGGAATACGTAGCAATCGGTCCTCGTTTTTCAAACATAATTTCACAGACGCTAATGGTCC 1854
|||||| | |||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1908 TGGAATTCATAGCAATCGGTCCTCGCTTTTCAAACATAATTTCACAGACGCTGATGGTCC 1967
Query 1855 TTCTCAAACGACTTCCTCCTAAGGGGAAGAAACTTCTCGTCTTTGGGACAACAAGTGAAC 1914
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 TTCTCAAACGACTTCCTCCTAAGGGGAAGAAACTTCTCGTCTTTGGGACAACAAGTGAAG 2027
Query 1915 TGACCTTCTTAGACTCTGTTGGTATCTGTGATTCCTTCTCTATCACTTACTCTGTTCCAA 1974
| ||||||||||| ||||||||||||| ||||| ||||||| ||||| |||||||||| |
Sbjct 2028 TAACCTTCTTAGAGTCTGTTGGTATCTCTGATTGCTTCTCTGTCACTCACTCTGTTCCGA 2087
Query 1975 CATTA-AAAACAGAGGACGCAAAGAAGGTGCTAACGCAGCTTGACGTCTTCTCAGAGGAT 2033
|| | |||| ||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 2088 CACTGCAAAA-AGAGGACGCAAAGAAGGTGCTAAATCAGCTTAACCTCTTCTCAGAGGAT 2146
Query 2034 GATGTCGACGCAGCGGCAGAGGCTCTCAATGACATGCCAATCAAGAAGCTTTACATGCTA 2093
||||| || |||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2147 GATGTTGATTCAGCTGCAGAGGCTCTCAATGACATGCCAATCAAGAAGATTTACATGCTA 2206
Query 2094 ATAGAGATGGCTGCACAAGGAGAACATGGTGGATCTGCAGAAGCTATCTACGCCGGGAGA 2153
||||| |||||||| ||||||||| | ||||||||||||||||||||||| || ||||||
Sbjct 2207 ATAGAAATGGCTGCGCAAGGAGAAAACGGTGGATCTGCAGAAGCTATCTATGCTGGGAGA 2266
Query 2154 GAGAAAATCAAGATCACTCATTTCT-TCGATTGCCTACAAGACATCGTTCGATTC 2207
||||||||||| |||| |||||||| | |||||| || |||| || |||| |||
Sbjct 2267 GAGAAAATCAATATCAATCATTTCTAT-GATTGCTTAGGAGACTTCATTCGCTTC 2320
Score = 278 bits (150), Expect = 2e-73
Identities = 166/173 (96%), Gaps = 3/173 (2%)
Strand=Plus/Plus
Query 1 AACTTGAGATCGAAA---CAGCCATGGCGGGTCGTTACGGATCGCAAGTCATGACGATGA 57
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 AACCTGAGATCGAAACCCCAGCCATGGCGGGTCGTTACGGATCGCAAGTCATGACGATGA 137
Query 58 CTGTGACCAATACTCCGTCTGCAGATCTAGCTTTTACCAACCTCGCTTACTGCTCCTCTT 117
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 138 CTGTGACCAATACTCCGTCCGCAGATCTAGCTTTTACTAACCTCGCTTACTGCTCTTCTT 197
Query 118 CCGATCTCCGTCAATTCTCCGTTCCCGGTTCCGATCTCTTCCTCGCCAACGTT 170
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CCGATCTCCGTCAATTCTCCGTTCCCGGTTCCGATCTCTTCCTCGCCAACGTT 250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110692201725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5