BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943267

Length=581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04930.1 | Symbols: DES-1-LIKE | fatty acid desaturase famil...   525    2e-148


> AT4G04930.1 | Symbols: DES-1-LIKE | fatty acid desaturase family 
protein | chr4:2509133-2511145 FORWARD LENGTH=1329
Length=1329

 Score =  525 bits (284),  Expect = 2e-148
 Identities = 348/377 (92%), Gaps = 12/377 (3%)
 Strand=Plus/Plus

Query  19   GTCATGGCTACAGATTTCTTTTGGTCTTACACCGATGAGCCTCATGCTTCTAGGAGACGT  78
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  158  GTCATGGCTACAGATTTCTTTTGGTCTTACACCGATGAGCCTCATGCTTCGAGGAGACGT  217

Query  79   CAGATTCCGTATCGTTATCCTCAGATTAGACAACTATTTGGTCCTGATCCATGGGCTTTC  138
            ||||||| || | |||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  218  CAGATTCTGTCTTGTTACCCTCAGATTAGACAACTCTTTGGTCCTGATCCATGGGCTTTC  277

Query  139  CTCAAGATCGCATTAGTAGTTATTCTTCAACTTTCAACAGCTGCAATCCTTCACAACTCA  198
            ||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| 
Sbjct  278  CTCAAGATCACATTAGTAGTAATTCTTCAACTCTCAACAGCTGCAATCCTTCACAACTCT  337

Query  199  GGATGGCTCAAGATTCTAGCCATTG-----------G-ATCATTCCTCAATCACAATCTC  246
            |||||||||||||||||| ||||||           | |||||||||||| |||||||||
Sbjct  338  GGATGGCTCAAGATTCTATCCATTGCTTACTTCTTTGGATCATTCCTCAACCACAATCTC  397

Query  247  TTTTTAGCAATCCATGAGCTAAGTCACAACCTTGCCTTTTCAACTCCCGTCTACAATCGT  306
            || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  398  TTCTTAGCAATCCATGAGCTAAGTCACAACCTTGCCTTTTCAACTCCTGTCTACAATCGT  457

Query  307  TGGCTCGGTATTTTCGCCAATCTCCCAATCGGTGTACCAATGTCGGTAACTTTCCAAAAA  366
            || |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct  458  TGTCTCGGTATTTTCGCAAATCTCCCAATCGGTGTACCAATGTCAGTAACTTTCCAAAAA  517

Query  367  TACCATCTCGAGCATCA  383
            |||||||||||||||||
Sbjct  518  TACCATCTCGAGCATCA  534


 Score =  315 bits (170),  Expect = 4e-85
 Identities = 188/197 (95%), Gaps = 0/197 (0%)
 Strand=Plus/Plus

Query  385   GAACATTATGTTTTTAACCCGAATCAAGAGACTTATTCGTATTACGGTCCATTAAATCTG  444
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  833   GAACATTATGTTTTTAACCCGAATCAAGAGACTTATTCGTATTACGGTCCATTGAATCTA  892

Query  445   CTAACATGGGGTGTCGGCTACCATAACGAGCACCATGAGTTCCCGAGGATACCGGGAAAT  504
             ||||||||| |||| || |||||||||||||| || || |||||||||||||||||||||
Sbjct  893   CTAACATGGAGTGTTGGTTACCATAACGAGCATCACGATTTCCCGAGGATACCGGGAAAT  952

Query  505   AAGCTGCATTTGGTGAAGGAGATTGCAGGAGAGTATTATGAAGGATTGGAGTCGTAAAAG  564
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  953   AAGCTGCATTTGGTGAAGGAGATTGCAGGAGAGTATTATGAAGGATTGGAGTCGTATAAG  1012

Query  565   TCATGGTCACAAGTGAT  581
             |||||||||||||||||
Sbjct  1013  TCATGGTCACAAGTGAT  1029



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27930185732


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5