BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943269
Length=1508
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04950.1 | Symbols: | thioredoxin family protein | chr4:251... 2431 0.0
AT4G32580.1 | Symbols: | Thioredoxin superfamily protein | chr... 630 9e-180
> AT4G04950.1 | Symbols: | thioredoxin family protein | chr4:2517666-2519977
REVERSE LENGTH=1736
Length=1736
Score = 2431 bits (1316), Expect = 0.0
Identities = 1432/1488 (96%), Gaps = 7/1488 (0%)
Strand=Plus/Plus
Query 14 CCTCTTCGAAGATGA-CTGGTACGGTGAAGGATATCGTTTCAAAGGCAGAGCTTGATAAC 72
||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 43 CCTCTTCGAAGATGAGC-GGTACGGTGAAGGATATCGTTTCAAAGGCGGAGCTTGATAAC 101
Query 73 TTGCGCCAGAGCGGCGCACCAATCGTGCTTCACTTCTGGGCTTCTTGGTGTGACGCTTCG 132
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 102 TTGCGCCAGAGCGGCGCACCAGTCGTGCTTCACTTCTGGGCTTCTTGGTGTGATGCTTCG 161
Query 133 AAGCAGATGGATCAAGTTTTCTCTCATCTCGCTACTGATTTCCCTCGTGCTCACTTCTTT 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 AAGCAGATGGATCAAGTTTTCTCTCATCTCGCTACTGATTTCCCTCGTGCTCACTTCTTT 221
Query 193 AGGGTAGAAGCTGAGGAACATCCTGAGATATCTGAGGCTTACTCTGTTGCTGCTGTGCCT 252
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 AGGGTTGAAGCTGAGGAACATCCTGAGATATCTGAGGCTTACTCTGTTGCTGCTGTGCCT 281
Query 253 TATTTCGTCTTCTTCAAGGATGGCAAAACTGTGGATACACTTGAGGGTGCAGATCCATCA 312
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 282 TATTTCGTCTTCTTCAAGGATGGTAAAACTGTGGATACACTTGAGGGTGCAGATCCATCA 341
Query 313 AGTTTAGCTAATAAGGTAGGCAAAGTTGCTGGTTCTAGTACCTCTGCGGAGCCTGCTGCT 372
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 342 AGTTTAGCTAATAAGGTTGGCAAAGTTGCTGGTTCTAGTACTTCTGCGGAGCCTGCTGCT 401
Query 373 CCTGCAAGCTTAGGGTTGGCTGCAGGGCCAACGATTCTTGAAACTGTGAAGGAGAATGCG 432
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 402 CCTGCAAGCTTAGGGTTGGCTGCTGGGCCAACGATTCTTGAAACTGTGAAGGAGAATGCG 461
Query 433 AAAGCTACTGTACAAGACCGAGCT---CCTGTATCTACCGCTGATGGTCTCAAGAGCCGT 489
|||||| || |||||||||||||| |||||||||||||| |||| |||||||||||||
Sbjct 462 AAAGCTTCTTTACAAGACCGAGCTCAGCCTGTATCTACCGCCGATGCTCTCAAGAGCCGT 521
Query 490 TTCGAAAAACTCACTAATTCTCAACCTGTCATGTTATTCATGAAAGGTAATCCTGAGGAG 549
|| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||| |||
Sbjct 522 TTGGAAAAGCTCACTAATTCTCACCCTGTCATGTTATTCATGAAAGGTATTCCTGAAGAG 581
Query 550 CCTAGGTGTGGGTTTAGCAGGAAAGTAGTTGACATTTTGAAAGAGGAGAAGGTTGATTTT 609
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 582 CCTAGGTGTGGGTTTAGCAGGAAAGTAGTTGACATTTTGAAAGAGGTTAACGTTGATTTT 641
Query 610 GGAAGTTTTGACATACTATCGGACAACGAAGTGCGAGAGGGTTTGAAGAAATTCTCTAAC 669
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 642 GGAAGTTTTGACATACTATCGGATAACGAAGTGCGAGAGGGTTTGAAGAAATTCTCTAAC 701
Query 670 TGGCCAACGTTTCCTCAGCTGTACTGCAACGGAGAGCTTCTTGGTGGAGCTGATATCGCA 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TGGCCAACGTTTCCTCAGCTGTACTGCAACGGAGAGCTTCTTGGTGGAGCTGATATCGCA 761
Query 730 ATAGCGATGCACGAGAGCGGTGAACTAAAAGATGCTTTCAAAGATCTTGGGATCATTACA 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 762 ATAGCGATGCACGAGAGCGGTGAACTAAAAGATGCTTTCAAAGATCTTGGGATCACGACA 821
Query 790 GTTGGTTCAAAAGAAAGTCAGGATGAAGCTGGAAAAGGAGGAGGGGTAAGTTCAGGCAAC 849
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 822 GTTGGTTCAAAAGAAAGTCAGGATGAAGCTGGAAAAGGAGGAGGGGTTAGTTCAGGAAAC 881
Query 850 ACAGGCTTAAGCGAGACCCTCCGAGCTCGGCTCGAAGGTCTGGTCAATTCGAAACCAGTT 909
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 882 ACAGGCTTAAGTGAGACCCTCCGAGCTCGGCTCGAAGGTCTGGTCAATTCCAAACCAGTT 941
Query 910 ATGCTGTTCATGAAAGGGAA-ACCAGAAGAACCAAAGTGTGGGTTTAGTGGGAAAGTGGT 968
||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||
Sbjct 942 ATGCTGTTCATGAAAGG-AAGACCAGAAGAACCAAAGTGTGGGTTCAGTGGGAAAGTGGT 1000
Query 969 TGAAATTCTCAACCAAGAAAAAATCGAGTTTGGGAGTTTTGATATACTCTTAGATGATGA 1028
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1001 TGAAATCCTCAACCAAGAAAAAATCGAGTTTGGGAGTTTCGATATCCTCTTAGATGACGA 1060
Query 1029 AGTTCGTCAAGGGCTTAAAGTGTATTCAAACTGGTCAAGCTATCCTCAGCTTTACGTGAA 1088
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 AGTTCGCCAAGGCCTTAAAGTGTATTCAAACTGGTCAAGCTATCCTCAGCTTTACGTGAA 1120
Query 1089 AGGCGAGCTTATGGGTGGATCAGACATTGTCTTGGAGATGCAAAAGAGCGGTGAGCTGAA 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 AGGCGAGCTTATGGGTGGATCAGACATTGTCTTGGAGATGCAAAAGAGCGGTGAGCTGAA 1180
Query 1149 AAAGGTTTTGTCCGAGAAAGGAATAACCGGAGAACAGAGTCTTGAAGATAGATTGAAGGC 1208
|||||| ||| |||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1181 AAAGGTCTTGACCGAGAAAGGGATCACTGGAGAACAGAGTCTTGAAGATAGATTGAAGGC 1240
Query 1209 GTTGATCAACTCCTCGGAAGTAATGCTTTTCATGAAAGGTTCACCAGATGAACCGAAATG 1268
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1241 ACTGATCAATTCCTCGGAAGTAATGCTATTCATGAAAGGTTCACCAGATGAACCGAAATG 1300
Query 1269 CGGATTTAGCTCCAAAGTTGTGAAAGCACTGAGAGGAGAAAACGTGAGTTTCGGATCGTT 1328
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1301 CGGATTTAGCTCCAAAGTTGTGAAAGCATTGAGAGGAGAAAACGTGAGTTTCGGATCGTT 1360
Query 1329 TGATATCTTGACCGATGAAGAAGTAAGGCAAGGGATTAAGAATTTCTCAAACTGGCCAAC 1388
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 TGATATCTTGACTGATGAAGAAGTAAGGCAAGGGATTAAGAATTTCTCAAACTGGCCAAC 1420
Query 1389 ATTTCCTCAGCTTTACTATAAAGGTGAGTTAATTGGAGGATGTGATATCATTATGGAGCT 1448
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 TTTTCCTCAGCTATACTACAAAGGTGAGTTAATTGGAGGATGTGATATCATTATGGAGCT 1480
Query 1449 AAGTGAGAGTGGTGATCTCAAAGCAACTCTATCTGAGTAAGTAATATA 1496
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1481 AAGTGAGAGTGGTGATCTCAAAGCAACTCTATCCGAGTAAGTAATATA 1528
> AT4G32580.1 | Symbols: | Thioredoxin superfamily protein | chr4:15719847-15720535
REVERSE LENGTH=514
Length=514
Score = 630 bits (341), Expect = 9e-180
Identities = 476/534 (89%), Gaps = 37/534 (7%)
Strand=Plus/Plus
Query 25 ATGACTGGTACGGTGAAGGATATCGTTTCAAAGGCA-GAGCTTGATAACTTGCGCCAGAG 83
|||| |||||| |||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 1 ATGAGTGGTACTGTGAAGGATATCGTTTCAAAGG-AGGAGCTTGATAACTTGCGCCACAG 59
Query 84 CGGCGCACCAATCGTGCTTCACTTCTGGGCTTCTTGGTGTGACGCTTCGAAGCAGATGGA 143
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CGGAGCACCACTCGTGCTTCACTTCTGGGCTTCTTGGTGTGACGCTTCGAAGCAGATGGA 119
Query 144 TCAAGTTTTCTCTCATCTCGCTACTGATTTCCCTCGTGCTCACTTCTTTAGGGTAGAAGC 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCAAGTTTTCTCTCATCTCGCTACTGATTTCCCTCGTGCTCACTTCTTTAGGGTAGAAGC 179
Query 204 TGAGGAACATCCTGAGATATCTGAGGCTTACTCTGTTGCTGCT-GTGCCTTATTTCGTCT 262
|||||||||||||||||||||||||||||| ||||||||| || ||||| ||||||||||
Sbjct 180 TGAGGAACATCCTGAGATATCTGAGGCTTATTCTGTTGCT-CTTGTGCCGTATTTCGTCT 238
Query 263 TCTTCAAGGATGGCAAAACTGTGGATACACTTGA-GGGTGCAGATCCATCAAGTTTAGCT 321
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 239 TCTTCAAGGATGGCAAAACTGTGGATACACTTGAAGGG-GCAGATCCATCAAGTTTAGCT 297
Query 322 AATAAGGTAGGCAAAGTTGCTGGTTCTAGTACCTCTGCGGAGCCTGCTGCTCCTGCAAGC 381
||||| || ||||||||||||||||||| | | | | | | || ||||||
Sbjct 298 AATAAAGTTGGCAAAGTTGCTGGTTCTA-T---T------A-C-T-C--CT---GCAAGC 339
Query 382 TTAGGGTTGGCTGCAGGGCCAACGATTCTTGAAACTGTGAAGGAGAATGCGAAAGCTACT 441
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 340 TTAGGGTTGGCTGCAGGGCCAACGATTCTTGAAACTGTTAAGAAGAATGCGAAAGCTTCT 399
Query 442 GTACAAGACCGAGCTC--C-TGTATCTACCGCTGATGGTCTCAAGAGCCGTTTCGAAAAA 498
| |||||||||||||| | ||||||||||||||||| |||||||| ||||| ||||||
Sbjct 400 GGACAAGACCGAGCTCAGCCTGTATCTACCGCTGATGCTCTCAAGAATCGTTTGGAAAAA 459
Query 499 CTCACTAATTCTCAACCTGTCATGTTATTCATGAAAGGTAATCCTGAGGAGCCT 552
||||| | | ||| |||||||||||||| |||| |||||| ||||||
Sbjct 460 CTCAC-----C-C----TGTTATGTTATTCATGAATGGTACTCCTGAAGAGCCT 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74397207690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5