BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943270

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G13740.1 | Symbols: AFP2 | ABI five binding protein 2 | chr1...   104    5e-22
  AT5G49138.1 | Symbols:  | other RNA | chr5:19915868-19917277 RE...  62.1    3e-09
  AT5G49130.1 | Symbols:  | MATE efflux family protein | chr5:199...  62.1    3e-09


> AT1G13740.1 | Symbols: AFP2 | ABI five binding protein 2 | chr1:4713674-4715407 
FORWARD LENGTH=1591
Length=1591

 Score =  104 bits (56),  Expect = 5e-22
 Identities = 80/90 (89%), Gaps = 8/90 (9%)
 Strand=Plus/Minus

Query  9    CTATTAGAAGAAACCAAATGTCTCTGCAAGAAACCACTCTTACTCGCAGGAAGCCAGTAA  68
            |||||||||||||||||||||||||||||||| ||||| ||||||||||        |||
Sbjct  834  CTATTAGAAGAAACCAAATGTCTCTGCAAGAAGCCACTTTTACTCGCAG--------TAA  783

Query  69   CCCATCTCTCATTCTCAAACGACACCGTTT  98
            ||||||||||||||||||||||||||||||
Sbjct  782  CCCATCTCTCATTCTCAAACGACACCGTTT  753


> AT5G49138.1 | Symbols:  | other RNA | chr5:19915868-19917277 
REVERSE LENGTH=1410
Length=1410

 Score = 62.1 bits (33),  Expect = 3e-09
 Identities = 33/33 (100%), Gaps = 0/33 (0%)
 Strand=Plus/Minus

Query  125  GACTTGTGGGGACCACCGTGGGGAGAGAAGCTT  157
            |||||||||||||||||||||||||||||||||
Sbjct  189  GACTTGTGGGGACCACCGTGGGGAGAGAAGCTT  157


> AT5G49130.1 | Symbols:  | MATE efflux family protein | chr5:19915872-19917525 
FORWARD LENGTH=1541
Length=1541

 Score = 62.1 bits (33),  Expect = 3e-09
 Identities = 33/33 (100%), Gaps = 0/33 (0%)
 Strand=Plus/Plus

Query  125   GACTTGTGGGGACCACCGTGGGGAGAGAAGCTT  157
             |||||||||||||||||||||||||||||||||
Sbjct  1105  GACTTGTGGGGACCACCGTGGGGAGAGAAGCTT  1137



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13723095477


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5