BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943280
Length=533
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05010.1 | Symbols: | F-box family protein | chr4:2567474-2... 568 3e-161
> AT4G05010.1 | Symbols: | F-box family protein | chr4:2567474-2568162
FORWARD LENGTH=495
Length=495
Score = 568 bits (307), Expect = 3e-161
Identities = 439/500 (88%), Gaps = 19/500 (4%)
Strand=Plus/Plus
Query 21 ATGGCGTTTTTGAGTGGTGGATTTGATATTAAGTCGAAACGTGAGTGTGAGGGATTAGTG 80
||||||| |||||||| ||||||||| || ||||||| ||||||| |||| |||||| |
Sbjct 1 ATGGCGTATTTGAGTGATGGATTTGAAATGAAGTCGACTCGTGAGTATGAGAGATTAGGG 60
Query 81 TTAGGGTTTGTTAGGTTTACTAGAGGATTAGGAAGGAAAAGAATTCTCATTTCTAAATCT 140
||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||| |
Sbjct 61 TTAGGGTTTGTGAGGTTTACTAGAGGATTAGGGAGGAAAAGGATTCTCATATCTAAA-CG 119
Query 141 A-ATTC--AAATTCTGA-TCGAGCTCC-G-GCA-A-A-TGATTC--G--TCGCCGGAAGC 187
| | | ||| ||| ||| | || | | | | | | || | || ||||| |
Sbjct 120 AGCTCCGGAAA--ATGATTCG-CCGCCGGTGAAGAGACCAAGTCATGAAACGACGGAATC 176
Query 188 TAATAAGTCTCTGCTTGAAACTCTGCATCAAGATATTTTGATTCGAGTACTTTGTCATGT 247
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TTGTAGGTCTCTGCTTGAAACTCTGCATCAAGATATTTTGATTCGAGTACTTTGTCATGT 236
Query 248 GGATCACGAGGACCTAGTGACGCTAAAACGTGTATCTAAAACAATAAGAAAAGCTGTAAT 307
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 237 GGATCACGAGGACCTAGCCACACTAAAACGTGTATCTAAAACAATAAGAAAAGCTGTAAT 296
Query 308 TGAAGCAAAGAAGTCGCATTTTGATTATAGCACACCTAAAAAGAGATTGCCTTTTCGAGA 367
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 297 TGAAGCAAAGAAGTCGCATTTTGATTATAGCACACCTAAAAAGAGATTGCCATTTCGAGA 356
Query 368 CGCAATACTAGTCCTTGAGG-AAGATTCGGATTCGAGTAATCAAGATGATGAAATGGAGC 426
|||||||||| ||||||| || ||||| |||| |||| ||||||||||||||||||||
Sbjct 357 CGCAATACTAATCCTTGATTCAA-ATTCGAATTCCAGTAGTCAAGATGATGAAATGGAGC 415
Query 427 CTCCTAATGCACCAATTCGAAGGAGGATTATTAGTCGTGAATCGGATTTGTCGAAGATCT 486
|||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||
Sbjct 416 CTCCTAATGCACCAATTCGAAGGAGGTTTATTAATCGAGAATCGGATTTGTCGAAGATCT 475
Query 487 CTATGGTATTGTTTAAATGA 506
||||||||||||||||||||
Sbjct 476 CTATGGTATTGTTTAAATGA 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25518946676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5