BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943282
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05018.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 483 1e-135
> AT4G05018.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G21500.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:2571413-2572177 FORWARD LENGTH=765
Length=765
Score = 483 bits (261), Expect = 1e-135
Identities = 527/644 (82%), Gaps = 64/644 (10%)
Strand=Plus/Plus
Query 21 ATGGAGGAAATTGGAAAAATCCCATGGACGATCTTCTTATTCTCTCATCCTATGTTCTCT 80
|||||||||| ||| ||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1 ATGGAGGAAACTGGTAAAATCCCATGGACGATCTTC---TTCTCTCATCCTCTGTTCTCT 57
Query 81 TGTTTCATTTCACTCTATACTATATTTCTACTTTATTTCCCTCAAGATTCTCTTCGGATT 140
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 58 TGTTTCATTTCACTCTACACTATATTTCTTCTTTATTTCCCTCAAGATTCTCTTCGAATT 117
Query 141 CTTATTTCTCC-TGTTCCTCTCCTCGTCGGAGCTTTCTTAGTCTCCTACTTCCGCT-TCG 198
|||||||| || ||| ||||||||| |||||||||||||| |||||| | ||| | |||
Sbjct 118 CTTATTTC-CCATGTCCCTCTCCTCATCGGAGCTTTCTTAATCTCCTGCCTCC-ATCTCG 175
Query 199 GGTTGACCC-GAGAATCCATTGCGCGACCCGGAAATAATGAGAATTCGATAGGACCCGAA 257
||| ||||| || |||||||||| |||||||||| |||||| ||||||||||||| |||
Sbjct 176 GGTCGACCCGGA-AATCCATTGCCCGACCCGGAAGCAATGAGGATTCGATAGGACCTGAA 234
Query 258 CTCAAAACTGGTCTCGGTTCAAATCCGGATTTCATGGGTGATTTAGTGGAAAGAAATTTG 317
|||||||| |||||||||| ||| |||||||| || | || | | | ||| |||
Sbjct 235 CTCAAAACGGGTCTCGGTTTAAACCCGGATTTTAT--G-GA---A-T-G---GAACTTT- 282
Query 318 AAATTGAGAGCTCCATTGGAAGTTA-T-AC-ACGAAGAAGAAGAACAG-C-----C---- 364
|||||| |||||||||||||||||| | || | ||||||||||||||| | |
Sbjct 283 AAATTGGGAGCTCCATTGGAAGTTATTCACAAAGAAGAAGAAGAACAGTCGATGACGGGT 342
Query 365 ------GAT--GACCCGGTTCGTAATGATCGAGAGGTTACCATCTTTATCGATGTTTAAC 416
||| |||||||||||| |||||| ||||||| ||||| |||||||||||||||
Sbjct 343 GTAAAAGATCCGACCCGGTTCGTGATGATCAAGAGGTTTCCATCGTTATCGATGTTTAAC 402
Query 417 CCAGAATCTGATTCCGAATTGGACCGCTATTTCCCGGTTATGAGTGAAAATGATCCAACC 476
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 403 CCGGAATCTGATTCCGAATTGGACCGCGATTTCCCGGTTATGAGTGAAAATGATCCAACC 462
Query 477 CGGTTCGTGAGGATCGAAAGGTTACCATCGTTGTCGATTAAACCGGAATTTTATTTGGTT 536
|||||||||||| | ||||||| | | ||||||||||||| | || ||| |
Sbjct 463 CGGTTCGTGAGGCTGGAAAGGT--C-A---------ATTAAACCGGAATCTGATATGGAT 510
Query 537 TTCGGGTCCGAATTGGATAACTATTTCCCGGTTATGGATGTAAA-GATCCGATC-CGGTT 594
| || ||||||||||| ||| |||| |||||| |||||||| |||| || | |||||
Sbjct 511 TACGACTCCGAATTGGACAACAATTT---GGTTATTGATGTAAAAGATC-GAACTCGGTT 566
Query 595 TAG-GA-GGATCGAGAGATTCCCTTTGTTATCGATAATTAAACC 636
| || || | |||| |||||| | ||| || || |||||||
Sbjct 567 C-GTGAAGG-TGGAGATATTCCCATCGTTGTCAATCTTTAAACC 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31346107728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5