BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943302
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05200.1 | Symbols: CRK25 | cysteine-rich RLK (RECEPTOR-like... 1315 0.0
> AT4G05200.1 | Symbols: CRK25 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 25 | chr4:2679723-2682309 REVERSE LENGTH=2098
Length=2098
Score = 1315 bits (712), Expect = 0.0
Identities = 891/976 (91%), Gaps = 18/976 (2%)
Strand=Plus/Plus
Query 21 ATGTCTTCTTGTTTCAAATCCTCTGTTTCTCTGATCTCAATTTTCTTCTTTATGATCTTA 80
||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 1 ATGTCTTCTTGTTTCAAATCCTCTGTTTCTCTGTTCTCAGTTTTCTTGTTTATGATCTT- 59
Query 81 AAAG-CTGTTTCTTCTGCAACAAATCCAATTTATCTCTACCACATATGTCCAAACACGAC 139
||| | ||| | | | || |||||| ||||||||||||||||||||||||||| ||
Sbjct 60 GAAGACAGTTAC-T-T----CAGATCCAACTTATCTCTACCACATATGTCCAAACACAAC 113
Query 140 AACGTACTCAAGAAACAGCACTTACTTAACCAATCTCCGAACTGTTCTTTCATCTCTCTC 199
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 114 AACGTACTCAAGAAACAGCAGTTACTTAACCAATCTCCGAACTGTTCTTTCATCTCTCTC 173
Query 200 CTCTCCAAACGCAGCTTACGCATCGCGTTTCGATAACGCAACCGCTGGTGAAGAGAATGA 259
|||||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||| ||
Sbjct 174 CTCTCCAAACGCAGCTTATGCATCGCTTTTTGATAACGCAGCCGCTGGTGAAGAGAACGA 233
Query 260 TAACAACAGAGTTTATGGTGTTTTCCTCTGCCGTGGAGACGTCTCAGCCGAAATCTGCCG 319
|| ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 234 TAGCAACAGAGTCTATGGTGTTTTTCTCTGCCGTGGAGATGTCTCAGCCGAAATCTGCCG 293
Query 320 TGATTGTCTTGCGTTTGCGGTCAACGAAACGCTTTACAGGTGTCCAAGAGAGAAAGTGGC 379
||| ||| | |||||||| | |||||||||||| | |||||||||||||||||||||||
Sbjct 294 TGACTGTGTCGCGTTTGCAGCCAACGAAACGCTCCAAAGGTGTCCAAGAGAGAAAGTGGC 353
Query 380 AGTGATTTGGTACGATGAGTGTATGTTAAGATACTCTAATCAAAGCATCGTTGGGCAAAT 439
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 354 AGTGATTTGGTACGATGAGTGTATGGTAAGATACTCTAATCAAAGCATCGTAGGGCAAAT 413
Query 440 GAGAATTAGACCTGCTGTTTTCTTGACGAACAAGCAAAACATCACAGAGAATCAAGTGAG 499
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GAGAATTAGACCTGGTGTTTTCTTGACGAACAAGCAAAACATCACAGAGAATCAAGTGAG 473
Query 500 CAGATTCAACGAGTCTTTGCCTGCTCTGCTCATCGACGTTGCGGTGAAAGCGGCTTCGAG 559
||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |||
Sbjct 474 CAGATTCAACGAGTCTTTGCCTGCTCTGCTCATAGATGTTGCGGTGAAAGCCGCTTTGAG 533
Query 560 CTCGAGAAAGTTCGCTACAGAGAAAGCGAATTTCACGGTGTTTCAAACGATTTATAGCCT 619
|||||||||||||||||| |||||||| ||||||||||| ||||| || || ||||||||
Sbjct 534 CTCGAGAAAGTTCGCTACGGAGAAAGCCAATTTCACGGTTTTTCAGACAATCTATAGCCT 593
Query 620 CGTGCAGTGCACGCCGGATTTGACCAATCAAGATTGTGAGAGCTGTTTGAGACAAG-CGA 678
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 594 TGTGCAGTGCACTCCGGATTTGACTAATCAAGATTGTGAGAGCTGTTTGAGACAAGTC-A 652
Query 679 TTAATTGGTTGCCTAGATGTTGTGATCGAAGTGTTGGCGGGAGAGTAATCGCTCCGAGTT 738
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 653 TTAATTACTTGCCGAGATGTTGTGATCGAAGCGTTGGCGGGAGAGTAATCGCTCCGAGTT 712
Query 739 GTAGCTTTAGATATGAGCTTTATCCGTTTTACAATGAAACTATAGCTGAGGCTACGATGG 798
||||||| ||||||||||||||||| |||||||||||||||||||||| |||| ||||||
Sbjct 713 GTAGCTTCAGATATGAGCTTTATCCATTTTACAATGAAACTATAGCTGCGGCTCCGATGG 772
Query 799 CTCCTCCTC-T--GTCTACGGTGGCTGCACCACCACTGAA-ACTCCCTTCAGAAGAAGGG 854
||||||||| | ||| |||||| |||||||||||||||| | ||| ||||||| ||||
Sbjct 773 CTCCTCCTCCTTCGTCAACGGTGACTGCACCACCACTGAATATTCC-TTCAGAAAAAGGT 831
Query 855 AAAAGCAAGAGCTCGACGGTTAAAGTAACAGCGGTCGCGGTACCGGTTTCTGTCTGCGTG 914
||| |||||| || ||| |||| ||| || ||| |||| ||||||||||||||||| |||
Sbjct 832 AAAGGCAAGAACTTGACAGTTATAGTTACCGCGATCGCTGTACCGGTTTCTGTCTGTGTG 891
Query 915 TTACTTCTTGGTGCTATGTGTTGGTTACTAGCAAAAAGAAGGAATAA-A--CTCAGTGCT 971
|||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct 892 TTACTTCTTGGTGCTATGTGTTGGTTACTAGCAAGAAGAAGGAATAATAAGCTCAGTGCT 951
Query 972 GAAACAGAGGATTTAG 987
||||||||||||||||
Sbjct 952 GAAACAGAGGATTTAG 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52057965165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5