BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943306

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G01410.1 | Symbols:  | Late embryogenesis abundant (LEA) hyd...   357    6e-98
  AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 | ...   261    5e-69


> AT4G01410.1 | Symbols:  | Late embryogenesis abundant (LEA) hydroxyproline-rich 
glycoprotein family | chr4:578165-579169 
FORWARD LENGTH=1005
Length=1005

 Score =  357 bits (193),  Expect = 6e-98
 Identities = 223/238 (94%), Gaps = 0/238 (0%)
 Strand=Plus/Plus

Query  241  GGCAACGGTATACCAGTTTCGCCGGAAGTGGCTAACGGTTTGAAGAATGATGAAGCTTAC  300
            ||||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||||
Sbjct  594  GGCAACGGTATACCAGTCTCGCCGGAAGTAGCTAATGGTTTAAAAAATGATGAAGCTTAC  653

Query  301  GGTGTCGTTTTGATGAGAGTGGTGATTTTAGGGAGGCTCCGATGGAAAGCTGGTGCGATT  360
            || |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct  654  GGCGTCGTTTTGATGAGAGTGGTGATTTTTGGGAGGCTACGTTGGAAAGCTGGTGCGATT  713

Query  361  AAGACTGGACGGTATGGATTTTATGCAAGGTGTGATGTGTGGTTGAGATTTAATCCATCT  420
            ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct  714  AAGACTGGACGGTATGGATTTTACGCCAGATGTGATGTGTGGTTGAGATTTAATCCATCT  773

Query  421  CCTAATGGACAAGTTCCTCTTCTCGCTCCGTCAACTTGTAAAGTTGATGTCTAGTCtt  478
             |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  774  TCTAACGGACAAGTTCCTCTTCTCGCTCCTTCAACTTGTAAAGTTGATGTCTAGTCTT  831


> AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 
| chr4:906079-912930 FORWARD LENGTH=3975
Length=3975

 Score =  261 bits (141),  Expect = 5e-69
 Identities = 171/185 (92%), Gaps = 3/185 (2%)
 Strand=Plus/Plus

Query  25   ATGGCTCCATCTTGCCGACAGATCAGCGAAAGATCTCCGTTGGTGAACCAGCAGCGTCAA  84
            |||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTCCGTCTCGCCGACAGATCAGCGGAAGATCTCCGTTGGTGAACCAGCAGCGTCAA  60

Query  85   ATCACCTCCTTCTTTGGGAAATATGCTTCCT--T-TTCTTCTCCATCTCCATCACCTTCA  141
            |||||||||||||||||||||| |||||| |  | ||||||||| |||||||| ||||||
Sbjct  61   ATCACCTCCTTCTTTGGGAAATCTGCTTCATCATCTTCTTCTCCGTCTCCATCTCCTTCA  120

Query  142  CCACCTCTGTCCAATAAGAAAACCCCCAAATCTATCAACCCTAACCCTAATTCTCCGTCT  201
            ||| |||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct  121  CCATCTCTCTCCAATAAGAAAACCCCCAAATCTAACAACCCTAACCCTAAATCTCCGTCT  180

Query  202  CCGTC  206
            |||||
Sbjct  181  CCGTC  185



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23559814943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5