BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943308

Length=457
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16710.1 | Symbols:  | glycosyltransferase family protein 28...   394    4e-109


> AT4G16710.1 | Symbols:  | glycosyltransferase family protein 
28 | chr4:9398548-9399801 FORWARD LENGTH=919
Length=919

 Score =  394 bits (213),  Expect = 4e-109
 Identities = 242/256 (95%), Gaps = 1/256 (0%)
 Strand=Plus/Plus

Query  163  AGAGAGAATGCGAAGAGAG-AGTGTTTGTAACTGTAGGAACAACGAGTTTCGATGCGCTT  221
            ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct  218  AGAGAGAATGCAAAGAGAGTAGTGTTTGTAACTGTAGGAACAACGAGTTTCGATGCTCTT  277

Query  222  GTGAAAGCAGTGGTTAGTGAAGATGTTAAAGACGAATTGCAGAAAAGAGGATTTACTCAT  281
            |||||||||||||||||| || |||||||||||||| ||||||| |||||||||||||||
Sbjct  278  GTGAAAGCAGTGGTTAGTCAAAATGTTAAAGACGAACTGCAGAAGAGAGGATTTACTCAT  337

Query  282  CTTCTCATTCAAATGGGTCGAGGAAACTTTTTCCCAACTAAGTGTGATGGAGCAGATGGA  341
            ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct  338  CTTCTTATTCAAATGGGTCGAGGAATCTTTTTCCCAACTAAGTGTGATGGAGCGGATGGA  397

Query  342  TCATTAGTTGTGGATTACTTCACATTTTCCTCGAGTATCGCTGATTATATTCGGTTTGCA  401
            |||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct  398  TCATTAGTTGTGGATTACTTCACATTTTCCTCAAGTATCGCTGATTATATTCGATCTGCA  457

Query  402  TCTCTTGCTATTAGTC  417
            ||||||| ||||||||
Sbjct  458  TCTCTTGTTATTAGTC  473


 Score = 71.3 bits (38),  Expect = 8e-12
 Identities = 51/57 (89%), Gaps = 2/57 (4%)
 Strand=Plus/Plus

Query  109  AGCAAGATTCTTGGATCTGCCTCTTAAGACCAATCGGTGCTTTCGCGTGTCCTCAGA  165
            ||||||||||||||||||||||||||||| | ||||||||||| |  | ||||||||
Sbjct  122  AGCAAGATTCTTGGATCTGCCTCTTAAGATCGATCGGTGCTTTTG--TATCCTCAGA  176



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21765935317


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5