BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943312
Length=2007
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59550.1 | Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-lik... 885 0.0
AT4G05360.1 | Symbols: | Zinc knuckle (CCHC-type) family prote... 342 7e-93
> AT3G59550.1 | Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-like
family protein | chr3:21997054-22000678 FORWARD LENGTH=2472
Length=2472
Score = 885 bits (479), Expect = 0.0
Identities = 811/965 (84%), Gaps = 47/965 (5%)
Strand=Plus/Plus
Query 515 CGAGATTGAGAAAAGGCGTGATGCTGCACGCGATTTAAGCCCTGCGTCTCATCCACCATT 574
||||||||||| || |||||| ||||||| ||| ||||||| |||| |||||| ||||
Sbjct 961 CGAGATTGAGAGAATGCGTGACGCTGCACATGATCTAAGCCCCACGTCCCATCCATCATT 1020
Query 575 TGCTGCACAACAACATAG-TGTCAGAGTT----G----GA-TCCTTACATGAAAGTTTGA 624
||||||||||||||| | |||||||||| | || || || |||||| |||||
Sbjct 1021 TGCTGCACAACAACA-GGATGTCAGAGTTGAACGCACTGAGTCATTGGATGAAACTTTGA 1079
Query 625 ATGATAAGGAAGCCACTATTCATAATATTGATGAAGAAGTGTTAAATTCTAGAGGGCATT 684
|||| |||||| ||||||| | || ||||||||||||| ||||||||||| || ||||||
Sbjct 1080 ATGAGAAGGAACCCACTATCCCTAGTATTGATGAAGAAATGTTAAATTCTGGAAGGCATT 1139
Query 685 CCATGTTTGAGTTTCGCTTAAGATCTCCAAGTT-T--TGCTGGTTCTGAGGAAGAACGTG 741
| ||||||| |||||| | |||||||| ||| | |||||||||||||||||||||||
Sbjct 1140 CTGCGTTTGAGCTTCGCTCAGGATCTCCAGGTTCTGCTGCTGGTTCTGAGGAAGAACGTG 1199
Query 742 CAGATTTTGTGCATCCATCACCTGAACTGGTTCTGCAGCCAAGTACTCCTCCT-CCCACA 800
||||||||||||||||||||||| ||||||| || ||||| | | |||||||| |||| |
Sbjct 1200 CAGATTTTGTGCATCCATCACCTCAACTGGTGCTTCAGCC-A-T-CTCCTCCTCCCCA-A 1255
Query 801 CCACAAACAAGGCCAAGAAAGAGGAAGCACTATGATAAGACCTATGTC-TTATTAAGTC- 858
||||||| |||| |||| ||||||||| ||| |||| | | | | |||||| |
Sbjct 1256 CCACAAAGAAGGGCAAGGAAGAGGAAGAACTTTGAT--G--GTGTCACAGTATTAA-CCA 1310
Query 859 ACAAGATCCTGAGAAAAAGGCTTGAGGATCCTAGTAAGACTGTTCGTAAGAGAAAGAAGT 918
|||||| | | || |||||||| ||||||||||| | ||| | |||||||||||||||
Sbjct 1311 ACAAGAACATAAGTGAAAGGCTTAAGGATCCTAGTGATACTCTACGTAAGAGAAAGAAGA 1370
Query 919 TGCCTTCATCTAAACT-AGGTTTTTGGAGACTTG-ATAACCAGTCAAAGAAGGATCAACT 976
|||||||||| ||| | | | ||||||||| || |||||||||||| ||||||||||
Sbjct 1371 TGCCTTCATCCAAATTAAAG-TTTTGGAGA-ATGAATAACCAGTCAAGGAAGGATCAAAA 1428
Query 977 TTTCAATGAGCCCTTGTTTACTGGCTTCTCAAATGTTTTACGCAGTGTCTTTGAAAAGGA 1036
||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 1429 TTTCAATGAGCCCTTGTTTACTGGCTTCTCAGATGATTTACGCAATGTCTTTGAAAAGGA 1488
Query 1037 CTATGTAGCTTCAAAACCATATCTTGCTGTTCCTGATGAAACTATT-CCAGAACCTGCAT 1095
||||||||||||||| ||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct 1489 CTATGTAGCTTCAAAGCCACATCTTGCTGTTTCTGATGAAACT-TTACCAGAACCTGCAT 1547
Query 1096 C---ATCTCCAACTCGAGAAGCTGAAACAGAAATTAACCCGGCCTCTCCAGTTCCTGATT 1152
| |||||| ||||||||||||||| ||||||||| |||| ||||||| |||| ||||
Sbjct 1548 CTGTATCTCCTACTCGAGAAGCTGAAGTAGAAATTAATCCGGTCTCTCCAATTCCAGATT 1607
Query 1153 CTACTAATCGAGACAGTACAGTTCAGCGGCCTCCA-CAACAGGAAACTGAAGATGTCCAA 1211
||||||||| ||||||||||||||||| ||||| | ||| ||||||||||||||| |
Sbjct 1608 CTACTAATCCAGACAGTACAGTTCAGCTATCTCCAGCG-CAGCAAACTGAAGATGTCCTA 1666
Query 1212 GGCGT-TGCAGGTCCTCAATCCGCGCGTGCAGAGTCTGTAGCAGCAGAAGCACAATCTCC 1270
| | | ||||||||||| | |||||| |||||||||||||||| ||||||||||||||||
Sbjct 1667 GAC-TCTGCAGGTCCTCGACCCGCGCATGCAGAGTCTGTAGCAACAGAAGCACAATCTCC 1725
Query 1271 TCAGCCATCTAACAATGACGACATAGAAATCGAACATTTCAGGGATGGTGGTTTCCATGA 1330
|| | ||| | | || || ||||| | ||| |||||||| |||||||||||||||| |
Sbjct 1726 TCGGACATTTGATAACGATGACATGGGAATAGAACATTTAAGGGATGGTGGTTTCCCGG- 1784
Query 1331 T-TACATGCCGTCACCACCTCCACGATCCTCACCTTTTAGAACCAATGACTTCACCACTC 1389
| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||
Sbjct 1785 TGTACATGCCGTCACCACCTCCAAGATCTTCACCTTTTAGAACCGATGACTTCACCACTC 1844
Query 1390 AGCCT--AACACTTGGGAGACAGAATCTT-TCAGAACAGAGACTTCAACTTCCACAAATC 1446
|| || || | ||||||||||||||||| | ||||||||| |||||||||||||| ||
Sbjct 1845 AGTCTGGAA-A-TTGGGAGACAGAATCTTAT-AGAACAGAGCCTTCAACTTCCACAGTTC 1901
Query 1447 CAGAG 1451
|||||
Sbjct 1902 CAGAG 1906
> AT4G05360.1 | Symbols: | Zinc knuckle (CCHC-type) family protein
| chr4:2728204-2732337 FORWARD LENGTH=2208
Length=2208
Score = 342 bits (185), Expect = 7e-93
Identities = 241/267 (90%), Gaps = 7/267 (3%)
Strand=Plus/Plus
Query 881 TGAGGATCCTAGTAAGACTGTTCGTAAGAGAAAGAAGTTGCCTTCATCTAAACTAGGTTT 940
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 246 TGAGGATCCTAGTAAGACTGTTCGTAAGAGAAAGAAGTTGTCTTCATCAAAACTAGGTTT 305
Query 941 TTGGAGACTTGATAACCAGTCAAAGAAGGATCAACTTTTCAATGAGCCCTTGTTTACTGG 1000
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 306 TCGGAGACTTGATAACCAGTCAAAGAAGGATCAACTTTTCAACGAGCCCTTGTTTACTGG 365
Query 1001 CTTCTCAAATGTTTTACGCAGTGTCTTTGAAAAGGACTATGTAGCTTCAAAACCATATCT 1060
||||||||||||||||| |||||||||| ||||||| | |||||| |||| ||||| |
Sbjct 366 CTTCTCAAATGTTTTACTCAGTGTCTTTAAAAAGGATTGTGTAGC---AAAATCATATTT 422
Query 1061 TGCTGTTCCTGATGAAACT--ATTCCAGAACCTGCATCATCTCCAACTCGAGAAGCTGAA 1118
||||| |||| | ||| || || | | ||||| ||||||||| |||||||||||||||
Sbjct 423 TGCTGCTCCTAAAGAACCTGCAT-CT-GTACCTGTATCATCTCCTACTCGAGAAGCTGAA 480
Query 1119 ACAGAAATTAACCCGGCCTCTCCAGTT 1145
|||||||||||| ||||||||||||||
Sbjct 481 ACAGAAATTAACTCGGCCTCTCCAGTT 507
Score = 132 bits (71), Expect = 2e-29
Identities = 77/80 (96%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 1802 TTCTGGAGATCTAAGTTTGAACAAGATCTTGGCAGGAAAGACAAGGAAAATAGCTGCTCG 1861
||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 870 TTCTGGATATCTAAGTTTGAACAAGATCTTGGAAGGAAAGACAAGAAAAATAGCTGCTCG 929
Query 1862 AATGTTCTACGAGACACTGG 1881
||||||||||||||||||||
Sbjct 930 AATGTTCTACGAGACACTGG 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99447279645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5