BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943314
Length=2456
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25730.1 | Symbols: | FtsJ-like methyltransferase family pr... 2736 0.0
> AT4G25730.1 | Symbols: | FtsJ-like methyltransferase family
protein | chr4:13102679-13106780 REVERSE LENGTH=2755
Length=2755
Score = 2736 bits (1481), Expect = 0.0
Identities = 2160/2477 (87%), Gaps = 90/2477 (4%)
Strand=Plus/Plus
Query 20 CCATGGGAAAGGTCAAAGGAAAGCATCGTTTGGATACGTACTATCGTCTAGCTAAGGAGA 79
||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| |
Sbjct 61 CCATGGGTAAGGTCAAAGGAAAGCATCGTTTGGATAAGTACTATCGTCTCGCTAAGGA-A 119
Query 80 -GTGGACTCCGTTCTCGAGCTTCTTACAAGCTTCTCCAGCTTGACGCCAAGTTCAATTTT 138
||||| |||||||||||||||| ||||||||||| ||||| |||||||||| | | ||
Sbjct 120 CGTGGATTCCGTTCTCGAGCTTCCTACAAGCTTCTTCAGCTCGACGCCAAGTACTCTCTT 179
Query 139 CTCCATTC--TTCAAGAACCGTTCTAGATCTTTGCGCTGCACCC-GGTGGTTGGATGCAA 195
||||| || ||| | ||||||| ||||| ||||| || ||| |||||||||||||||
Sbjct 180 CTCCACTCAGCTCATG--CCGTTCTCGATCTCTGCGCCGC-CCCTGGTGGTTGGATGCAA 236
Query 196 GTCGCCGTCCAGAAAGTTCCCGTCGGCAGCCTCGTTCTCGGTATCGATCTTGTTAAGATT 255
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 237 GTCGCCGTCGAGAAAGTTCCCGTCGGCAGCCTCGTTCTCGGTATCGATCTTGTCCCGATT 296
Query 256 GC-CCCCGTGCGTGGCTGTGTCACTATCCA-GCAGGATATCACGCGAACTACCGAGTGCA 313
| ||| || ||||||||||| ||||| | ||| ||||||| | || || ||||| |
Sbjct 297 -CTCCCTGTTCGTGGCTGTGTTACTAT-GACGCAAGATATCA--C-AAGGACTGAGTGTA 351
Query 314 AGGCGAAGATCAAGAAAGCCCTGAAGAAGCATGGTACTGATAAAACTTTCGATCTAGTTC 373
| ||||||||||| ||| || || ||||||| || || |||| || | ||||
Sbjct 352 AATCGAAGATCAAGCAAGTGATGGAGCAGCATGG---TGTTAGTGCTTTTAATTTGGTTC 408
Query 374 TACACGATGGGTCTCCAAATGTTGGTGGTGCATGGTCGCAAGAAGCTATGAGCCAAAACG 433
| ||||||||||||||||||||||||||||| ||| | ||||| ||||||||||| ||||
Sbjct 409 TGCACGATGGGTCTCCAAATGTTGGTGGTGCGTGGGCACAAGAGGCTATGAGCCAGAACG 468
Query 434 CTTTGGTTATTGATTCCT-TGAAACTGGCCACAGAGTTCTTAGCTCCTC-ATGGAAACTT 491
||||||||||||||| || | | | | ||||| |||||||||||| | | | || || ||
Sbjct 469 CTTTGGTTATTGATT-CTGTTAGATTAGCCACTGAGTTCTTAGCT-CGCAACGGGAA-TT 525
Query 492 CA-TCACCAAGATTTTCAGGTCACGAGATTATGACTCTGTGGTCTACTGTCTT-GGAGAG 549
| |||||||| |||||||||| ||||| || |||||||| ||||||||||| |||| |
Sbjct 526 TAGTCACCAAGGTTTTCAGGTCTCGAGACTACAACTCTGTGCTCTACTGTCTTGGGAG-G 584
Query 550 CTGTTTGAAAATGTTGAAGTGTTTAAACCGATGGCTAGTCGTTCAACATCTGCAGAAACA 609
||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||
Sbjct 585 CTGTTTGAAAAAGTTGAAGTGTTTAAGCCGCCGGCTAGTCGTTCAGCATCTGCAGAAACA 644
Query 610 TATCTTTTGGGTTTGAATTACAAAGCTCCTGACAAGATTAATCCCAATCTTCTTGATTAT 669
|||||| |||||||||| ||| ||| |||| ||||||| ||||| |||||||||||||
Sbjct 645 TATCTTGTGGGTTTGAAATACTTAGCCCCTGCCAAGATTGATCCCCGTCTTCTTGATTAT 704
Query 670 AGACAACTATTTAAGGTGGT-AGCAGAACCTACAAAAAAGGTGAAGGATGTGCTTGGAGG 728
||||| || ||||||| || ||||||||| || | ||||||| |||||||||||||||
Sbjct 705 AGACATCTCTTTAAGG-AGTCAGCAGAACCCACGAGAAAGGTGGTGGATGTGCTTGGAGG 763
Query 729 ATCAAAACAGAAGAGAAACCGTGATGGGTATGAAGATGGAGAGTCCATTTTGAGAAAAGT 788
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 764 ATCAAAACAAAAGAGAAACCGTGATGGGTATGAAGATGGGGAGTCCATTTTGAGAAGAGT 823
Query 789 TGCATCTGCTGCTGATTTCATTTGGTCTGAAAATCCTCTTGA-GATTCTTGGCAC-AGTT 846
|||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |
Sbjct 824 TGCATCTGCTGCTGATTTCATTTGGTCTGAAAATCCTCTTGACG-TTCTTGGCACGACT- 881
Query 847 ACTTGTATATCTTTTGATGATCAAGCTTCTCTACCTTTAAAGGAACACAATTTGACTACA 906
|||| ||||| |||||||||||||| |||||||||||||||||||| ||||||| |||
Sbjct 882 ACTTCCATATCATTTGATGATCAAGCCTCTCTACCTTTAAAGGAACATGATTTGACGACA 941
Query 907 GAGGAGGTTAAAACACTATGCGACGATCTTCCTGTTTTGGGGAAGAATGACTTTAAGCAT 966
|||||| |||||| |||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 942 GAGGAGATTAAAATTCTATGCGATGATCTTCCTGTCTTGGGGAAGAATGACTTCAAGCAT 1001
Query 967 ATCCTAAAATGGAGAATGCAAATCAGGAAAGCTCTGTCTCCTGaaaaaaaGGAAGGAACT 1026
|||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 1002 ATCCTAAAATGGCGAATGCAAATCAGGAAAGCTCTGACTCCTGAGAAAAAGGAAGTTGCT 1061
Query 1027 AAAAAGGAGCTTGATGTGGGAAAGGAAGATGAGGAAAATGAGGATGATAAACTACTCAAT 1086
||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1062 AAACCTGAGCCTGATGTGGGAAAGGAAGATGAGGAAAATGAAGATGATAAACTACTCAAT 1121
Query 1087 GAATTGGAAGAGCTGACAAACACAGCGGACCGCAAGAATAAACGGGCAAAGAAGCTTCTT 1146
||||||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||
Sbjct 1122 GAATTGGAAGAGCTGACAAACACAGTTGACCGCAAGAAGAAACAGGCAAAGAAGATTCTT 1181
Query 1147 GCTAAACGACGGGCTAAGGATATGACGCGGAAGGCAATTGGTCCACAGATAGG-TGCACT 1205
|| |||||| |||||||||| | | |||||||||| | |||||||||||| || || |||
Sbjct 1182 GCAAAACGAAGGGCTAAGGACAAGGCGCGGAAGGCGACTGGTCCACAGAT-GGATGTACT 1240
Query 1206 TGAAGATGGTTAT-GTAGACCATGAATTGTTTTCTCTTTCTGTTATGAAGGGAAAGAAAG 1264
||||||||||| | || ||| |||||||||| |||||| || ||| |||||||||||||
Sbjct 1241 TGAAGATGGTT-TCGTCGACAATGAATTGTTCTCTCTTAATGCTATCAAGGGAAAGAAAG 1299
Query 1265 ACCTAATGACAGTTGACAATGATGAAGATGATAATGACAATGGCAACGTCGATGACAGTG 1324
| |||||| ||||||||||||||||||||||||||| ||||| | ||| ||||||||
Sbjct 1300 ATCTAATGGCAGTTGACAATGATGAAGATGATAATGGCAATG-C--CGT---TGACAGTG 1353
Query 1325 AGAACGAAGA----GG-GA-G---CTTCAGATGATTCCAAAGACAGTGTCATAGATTCTG 1375
|||||||||| || || | |||||||||| ||||||||||||| || ||||||||
Sbjct 1354 AGAACGAAGACCATGGCGAAGGAGCTTCAGATGACTCCAAAGACAGTGACAGAGATTCTG 1413
Query 1376 ATGAAGAACGTCA-AAGATACAATGAACAAATGGAAGAGATTTTTGATG-AGGCATATGA 1433
||||||||||||| || ||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 1414 ATGAAGAACGTCAGAA-ATACACTGAACAAATGGAAGAGATTTTTGA-GCAGGCATATGA 1471
Query 1434 GCGGTATATGGTGAAGAAAGAAGGAAGCGCAAAGCAAAGGAAGCGGGCTAGGCATGCACA 1493
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1472 GCGGTATATGGTGAAGAAAGAAGGAAGCGCAAAGCAAAGGAAGCGGGCTAGGCAGGCCCA 1531
Query 1494 CGCTGAGAAGCTGGAGGATGGTGATGGAGATGTAGCAATGAA-ACTCGATTATGATTCGG 1552
||||| ||||||||||| ||||||||||||| || |||||| | ||||||| ||||| |
Sbjct 1532 TGCTGAAAAGCTGGAGGAAGGTGATGGAGATGAAGAAATGAAGA-TCGATTACGATTCAG 1590
Query 1553 ATATGAATGAAGAGAATGATGAGGCAAACCCTCTTGTGGTACCACTTGATGATGGAGAGG 1612
||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1591 ATATGAATGAAGAAAAGGATGAGGCAAACCCTCTTGTTGTACCACTTGATGATGGAGTGG 1650
Query 1613 TCCAAACAAAGGAGGAAATATCCAACCAGTGGTTCAGTCGGGATATATTTGCAGAAGCCA 1672
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1651 TCCAAACAAAGGAGGAAATATCCAACCAGTGGTTCAGTCAGAATATATTTGCAGAAGCCG 1710
Query 1673 CCGAAGACGGAGACTTGGGAAAAGATGATCACAGTGAAGACGAAAT-GTCAACTAAGAAA 1731
||||| |||||||||||||||||||| || ||||||||||||| | ||| |||||||
Sbjct 1711 TGGAAGAAGGAGACTTGGGAAAAGATGA-CA--GTGAAGACGAAATAG-CAAATAAGAAA 1766
Query 1732 CAGAGCAAAAATCTTTCTAAACCTTACAAGTCAAAGCAGAAGGC---AA--GC--GTGT- 1783
||||||||||||| |||||||| ||||||||||||||||||| || || ||||
Sbjct 1767 AAGAGCAAAAATCTGTCTAAACCAGACAAGTCAAAGCAGAAGGCTTCAAAAGCAAGTGTG 1826
Query 1784 T-GTTTGACCAGAGCTTTCCCAACAGCTCTAACAAGGAAGACGA-TTTCGATATAGTCCC 1841
| || ||| |||||||| ||||| ||||| || |||||||| || ||| || |||||||
Sbjct 1827 TTGTCTGATCAGAGCTTGCCCAATAGCTCCAAGAAGGAAGATGAGTTT-GAGGTAGTCCC 1885
Query 1842 TGCCCCAGCCTTGGGTTCTGACTCAGACTCATCCTCTGATGATGATGTTCATGCGAAGGC 1901
||| |||||| | |||||||||||| ||||||||||| |||||||||||| | |||||
Sbjct 1886 TGCACCAGCCACAGATTCTGACTCAGATTCATCCTCTGAAGATGATGTTCATACCAAGGC 1945
Query 1902 CGAGATATTGGCCTGTGCCAAGAAAATGCTAAGGAAGAAGCAGAGAGAAGAGATGCTTGA 1961
||||||| |||| |||||||| |||||||| |||||||||||||||||| ||||||||||
Sbjct 1946 CGAGATACTGGCATGTGCCAAAAAAATGCTGAGGAAGAAGCAGAGAGAACAGATGCTTGA 2005
Query 1962 TGGTGATGCTTATAACAAATATATGTTTG-AGGACGAAGGTTTACCCAAGTGGTTTTTGG 2020
|| |||| ||||||||| | ||||||| || | ||||||||||| || |||||| |||
Sbjct 2006 TG---ATGCATATAACAAACACATGTTTGTAG-ATGAAGGTTTACCAAAATGGTTTGTGG 2061
Query 2021 ATGACGAAAAGCAGCACAGACAGCCGATGAAACCCGTGACAAAAGAAGAAGTTAATGCAA 2080
||||||| |||||||||||||| || |||||||| || || ||||| |||||||||||||
Sbjct 2062 ATGACGAGAAGCAGCACAGACAACCAATGAAACCTGTTACGAAAGATGAAGTTAATGCAA 2121
Query 2081 TGAAAGCTCAGTTCAAAGAAATCAACGCTCGTCCAGCCAAGAAAGTGGCTGAGGCCAAGG 2140
||||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 2122 TGAAAGCACAGTTCAAAGAGATCAATGCTCGTCCAGCCAAGAAGGTGGCAGAGGCCAAGG 2181
Query 2141 CACGGAAGAAGCGAGCTGCT-ATGAAAAGATTGGAGAAAGTGAGGAAGAAGGCAAACACA 2199
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 2182 CACGGAAGAAGCGAGCTGCCCA-GAAAAGATTGGAGAAAGTGAGGAAGAAGGCAAACACA 2240
Query 2200 ATATCTGACACAGCAGATATCTCAGACCGTTCAAAGGACAAGATGATAGATAAGCTATAC 2259
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2241 ATATCTGACACAGCAGATATATCAGACCGTTCAAAGGACAAGATGATAGACAAGCTATAC 2300
Query 2260 AAGAAAGCAGCAGAGCCAAGGAAGCCTAAG-AAAGAACTGGTTGTGTCTAAGAAAGGAGT 2318
|||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct 2301 AAGAAAGCAGCAGAGCCAAGAAAGCC-AAGGAAAGAACTGGTTGTGTCTAAGAAAGGAGT 2359
Query 2319 TGGGGTTAAGGTTGGGAAAGGTCAGAAGAGAGTGGATAGGAGGATGAAGAGTGATGCTAG 2378
||||||||| ||||| || || |||||||||||||||||||||||||||||||||| |||
Sbjct 2360 TGGGGTTAAAGTTGGTAAGGGACAGAAGAGAGTGGATAGGAGGATGAAGAGTGATGATAG 2419
Query 2379 GAAGCGCGGAGGAGGCAAGCCCAGTAGGAACGGGAAAAAGAGTGCCTGCCACTGGTAAAA 2438
||| || || ||||| |||||| ||||||||||| | ||| | || |||||||||
Sbjct 2420 GAAACGTGGGGGAGGAAAGCCCGGTAGGAACGGGCAGAAG-G-GC-----ACTGGTAAAG 2472
Query 2439 TCAGGCCAGAAAGGAAA 2455
||||||||||||||||
Sbjct 2473 -CAGGCCAGAAAGGAAA 2488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121855504547
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5