BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943323 Length=1876 Score E Sequences producing significant alignments: (Bits) Value AT4G05500.1 | Symbols: | pseudogene, F-box protein family, AtF... 394 2e-108 AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:2... 344 2e-93 AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2... 213 5e-54 AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2... 204 3e-51 AT4G03630.1 | Symbols: | RNI-like superfamily protein | chr4:1... 143 7e-33 > AT4G05500.1 | Symbols: | pseudogene, F-box protein family, AtFBL9/AtFBL23, contains similarity to N7 protein GI:3273101 from (Medicago truncatula); blastp match of 39% identity and 1.6e-34 P-value to GP|3273101|emb|CAA76808.1||Y17613 N7 protein {Medicago truncatula} | chr4:2780170-2782675 REVERSE LENGTH=2506 Length=2506 Score = 394 bits (213), Expect = 2e-108 Identities = 372/447 (83%), Gaps = 18/447 (4%) Strand=Plus/Plus Query 357 TCAAGTAATCTGAGAAGCCTTAGACTTGTAAGATGCCATCAAATAACAGATAAGGGAGTT 416 ||||||||||||| ||||||| |||||||||| ||| || |||||||||| |||||||| Sbjct 1982 TCAAGTAATCTGAAAAGCCTTGGACTTGTAAGGTGCTTTCCAATAACAGATGAGGGAGTT 2041 Query 417 GCCGAAGCAGTTGT-GAAACTTCCATTGCTTGAAGACCTCGAGGTCTCGTACTGCTCATT 475 ||| |||||||| | |||| | || ||||||||| |||| ||||| || ||||||| || Sbjct 2042 GCCAAAGCAGTT-TCGAAAGTACCGTTGCTTGAATACCTTGAGGTTTCATACTGCTTGTT 2100 Query 476 TTCAGGAGAGTGTGTGACTGTTGTAGGTCAGTCTTGTCC-ACATCTGACGACATTGAAGC 534 ||||||||||| | ||| | | |||| | ||||||||| | |||||| |||| |||||| Sbjct 2101 TTCAGGAGAGTCTCTGAGAGATATAGGCCGGTCTTGTCCGA-ATCTGAAGACACTGAAGC 2159 Query 535 TAAACC--GCCGACCTCG-CGTCGA-GTTTGTAATAAATA-TGCG--TGATCATAATGCC 587 |||||| ||| ||| | || | |||| | ||||| || | |||| |||||||| Sbjct 2160 TAAACCGAGCC--CCT-GAAATC-ATGTTT-T--CAAATAGTGGGTTTGATGATAATGCC 2212 Query 588 ATAGCAATTGCAGAAAGCATGCCTGAGCTACGCCACCTCCAGCTTTTAGGGAACGCACTA 647 | |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 2213 AAAGCAATTGCAGAAAGCATGCCTGAACTACGCCACCTCCAGCTTTTAGGGAACGGGCTA 2272 Query 648 ACCAACACTGGCTTGAACGCCATTCTTGACAGTTGTACTCACCTGGACCATCTTGATTTA 707 ||||| | |||||||||||||||||||| ||||| |||||||||| || ||||||||| Sbjct 2273 ACCAATAAGGGCTTGAACGCCATTCTTGATGGTTGTCCTCACCTGGAACACCTTGATTTA 2332 Query 708 CGCCAGTGTTACAATATTAACCTTCTCGAGGATCTCATGAAGCAATGTGTTGAAAGGATC 767 |||||||||| ||| || |||||| | | |||||||| ||| | |||| |||| |||||| Sbjct 2333 CGCCAGTGTTTCAACATCAACCTTGTTGGGGATCTCAAGAAACGATGTTTTGAGAGGATC 2392 Query 768 AAATATTTGAGATGCCCCAATGACTCA 794 ||| | ||||||||||||||||||||| Sbjct 2393 AAAGACTTGAGATGCCCCAATGACTCA 2419 > AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:21296833-21297858 REVERSE LENGTH=907 Length=907 Score = 344 bits (186), Expect = 2e-93 Identities = 533/694 (77%), Gaps = 49/694 (7%) Strand=Plus/Plus Query 1118 TGATATACTGGAAAATGCTCAAAAAGTGTGCAGATCGTGGCG-TCGCGTTTGTAAAGACC 1176 ||| |||||||| || ||||| |||||||| |||||||| || | ||||||||||||| Sbjct 15 TGAGATACTGGAGAACGCTCAGAAAGTGTGTAGATCGTGACGAT-ATGTTTGTAAAGACC 73 Query 1177 CCTCGATGTGGCGGAAGATTGACATGGAC-AACCTCGGAG--ACTTGGGAGCC---A-TG 1229 | || || ||||| || || ||||| | | || || ||| || | || | || Sbjct 74 CATCCATATGGCGTAAAATCGACAT-G-CGAATCT-TGAGTTAC-AACAAACCAGTACTG 129 Query 1230 GGGTACGATCTTGAGATC-ATGTGTCGTCATGCAGTAGATCGTAGCCAGGGCGGCTTGGT 1288 | | || ||| |||| | || |||||| | || || ||||||||| |||| |||||| | Sbjct 130 GTGAACAATCCTGAG-GCGATATGTCGTAACGCCGTTGATCGTAGCGAGGGTGGCTTGCT 188 Query 1289 TGAGATTGACGTTTGGTACTTCGGTACTGATGAACTCCTCA-ATTACATTGCCGACAGGT 1347 ||||| || || || ||||||| | |||| ||||| | | ||||| || || |||| Sbjct 189 GGAGATCAACATTGGGGACTTCGGGAGTGATTCTCTCCTTACA-TACATCGCGGAGAGGT 247 Query 1348 CGAGTAATCTGAGAACCCTTAGACTTATAATGTGCT-ATCCAATAGCAGACGAAGGATTT 1406 | |||||||| |||| |||||||| ||||||||| | |||| ||||||| |||||| Sbjct 248 CAAGTAATCTTAGAAGCCTTAGAC---TAATGTGCTCA-GAAATAACAGACGATGGATTT 303 Query 1407 -ATCGAAGCAGTTGTGAAGCTTCCATTGATTGAATACCTCGAGCTTTCA-CACTGCTCCT 1464 || ||||||||||||| |||||| || ||||| | || ||| ||||| | | || | Sbjct 304 GTTC-AAGCAGTTGTGAAACTTCCAATGCTTGAAGAGCTTGAGGTTTCAGGAAT-ATCAT 361 Query 1465 TGTCAGGAGAGTCTCTGAAAGTTGTAGGTCAGTCTTGTCCAAATCTGAAGACATTGAAGC 1524 |||||||||||||| ||||| ||| ||| | |||||||||||||||||||||||||| || Sbjct 362 TGTCAGGAGAGTCTATGAAACTTGCAGGGCTGTCTTGTCCAAATCTGAAGACATTGATGC 421 Query 1525 TAAACTCCGAGCCTGACCCCAAATTTAATGAT--GATGAGTTTAATAATGAAGATGCTC- 1581 |||| || |||| | | |||| | | ||||| | || || | ||||| | Sbjct 422 TAAA--CC--GCCT---CTTTTACTTAA-GTTCGGATGA---TGATGATCATGATGC-CA 469 Query 1582 TAGCAATCGCAGAAAGCATGCCCGAACTACGCCACCTCCAGCTTTTTGGGAACATACTAA 1641 ||||||| |||||||||||||| |||||||||| |||||||||| |||||||| ||||| Sbjct 470 TAGCAATTGCAGAAAGCATGCCTAAACTACGCCATCTCCAGCTTTGTGGGAACAAACTAA 529 Query 1642 CCAATGTGGGATTGAACGCCATTCTTGACGGTTGTCCTCACCTGGAACACCTTGATCTAC 1701 |||| || || |||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 530 CCAAAACAGGCTTAAACGCCATTCTTGACGGTTGTCCTCACCTGGAACACCTCGATTTAC 589 Query 1702 GCAAATGT-TCCAACGTTGATCTTACCGGGGATCTAGAGAAGCGATGCGTTGAGAGGATC 1760 || ||||| || ||| ||| || ||| ||||||||||||| || |||||| || Sbjct 590 GCCAATGTATC-AACCTTG-TC-----GGGAATCTAGAGAAGCGTTGTTTTGAGAAAATT 642 Query 1761 AAAGATTTGAAACGCCCCAATGACTCAACCGCTG 1794 |||||||||| ||||| |||||| || ||| ||| Sbjct 643 AAAGATTTGAGACGCCACAATGATTCTACCTCTG 676 Score = 263 bits (142), Expect = 5e-69 Identities = 360/460 (78%), Gaps = 36/460 (8%) Strand=Plus/Plus Query 357 TCAAGTAATCTGAGAAGCCTTAGACTTGTAA-GATGC-CATCAAATAACAGATAAGGGAG 414 ||||||||||| ||||||||||||| ||| | ||| || |||||||||| | ||| Sbjct 247 TCAAGTAATCTTAGAAGCCTTAGAC---TAATG-TGCTCA-GAAATAACAGACGATGGAT 301 Query 415 TTG-CCGAAGCAGTTGTGAAACTTCCATTGCTTGAAGACCTCGAGGTCTC-GTACTGCTC 472 ||| | |||||||||||||||||||| |||||||||| || ||||| || | | | || Sbjct 302 TTGTTC-AAGCAGTTGTGAAACTTCCAATGCTTGAAGAGCTTGAGGTTTCAGGAAT-ATC 359 Query 473 ATTTTCAGGAGAGTGTGTGACTGTTGTAGGTCAGTCTTGTCCACATCTGACGACATTGAA 532 ||| |||||||||| | ||| ||| ||| | |||||||||| |||||| |||||||| Sbjct 360 ATTGTCAGGAGAGTCTATGAAACTTGCAGGGCTGTCTTGTCCAAATCTGAAGACATTGAT 419 Query 533 GCTAAACCGCCGAC-CTCGCGTCGAGTTTGTAATAAATATGCGTGATCATAATGCCATAG 591 ||||||||||| | | | | |||| | || ||| ||||||| ||||||||| Sbjct 420 GCTAAACCGCC-TCTTTTAC-TTAAGTTCG-GAT---GATG-ATGATCATGATGCCATAG 472 Query 592 CAATTGCAGAAAGCATGCCTGAGCTACGCCACCTCCAGCTTT-TAGGGAACGCACTAACC 650 |||||||||||||||||||| | |||||||| |||||||||| | |||||| ||||||| Sbjct 473 CAATTGCAGAAAGCATGCCTAAACTACGCCATCTCCAGCTTTGT-GGGAACAAACTAACC 531 Query 651 AACACTGGCTTGAACGCCATTCTTGACAGTTGTACTCACCTGGACCATCTTGATTTACGC 710 || || ||||| ||||||||||||||| ||||| |||||||||| || || ||||||||| Sbjct 532 AAAACAGGCTTAAACGCCATTCTTGACGGTTGTCCTCACCTGGAACACCTCGATTTACGC 591 Query 711 CAGTGTTACAATATTAACCTTCTCGAGGA-TCTC-ATGAAGCAATGTGTTGA-AAGGATC 767 || ||| | | |||||| ||| ||| ||| | ||||| ||| |||| || || Sbjct 592 CAATGT-A---TC--AACCTTGTCG-GGAATCTAGA-GAAGCGTTGTTTTGAGAAA-ATT 642 Query 768 AAATATTTGAGATGCCCCAATGACTCAA--TC-GCTGATT 804 ||| |||||||| ||| |||||| || | || ||||||| Sbjct 643 AAAGATTTGAGACGCCACAATGATTCTACCTCTGCTGATT 682 > AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2765962-2767957 REVERSE LENGTH=930 Length=930 Score = 213 bits (115), Expect = 5e-54 Identities = 206/248 (83%), Gaps = 13/248 (5%) Strand=Plus/Plus Query 1570 ATGAAGATGCTCTAGCAATCGCAGAAAGCATGCCCGAACTACGCCACCTCCAGCTTTTTG 1629 |||| ||||||||||||||||| |||||||||||| |||||||||||||||||| || || Sbjct 638 ATGATGATGCTCTAGCAATCGCTGAAAGCATGCCCAAACTACGCCACCTCCAGC-TTATG 696 Query 1630 GG-AACATACTAACCAA-TGTGGGATTGAACGCCATTCTTGACGGTTGTCCTCACCTGGA 1687 || ||| ||||||||| | || ||||| ||||||||||||||||||||||||||||| Sbjct 697 GGTAACGGACTAACCAACACT-GGCTTGAATGCCATTCTTGACGGTTGTCCTCACCTGGA 755 Query 1688 A---CACCTTGATCTACGCAAATGTTCCAACGTTGATCTTACCGGGGATCTAGAGAAGCG 1744 | ||||||||| ||||||| |||| |||| || | ||| |||| |||| || ||||| Sbjct 756 AGAACACCTTGATGTACGCAAGTGTTTCAACATTAACCTTGTCGGGAATCTTGAAAAGCG 815 Query 1745 ATGCGTTGA-GAGGATCAAAGATTTGAAACG-CCCCAATGACTCAACCGCTGG-TCACCC 1801 ||| | || |||||||||||| |||| ||| ||||| ||||||||| || || | |||| Sbjct 816 ATGTAT-GAAGAGGATCAAAGAGTTGAGACGGCCCCA-TGACTCAACTGC-GGATTACCC 872 Query 1802 ATATGGTA 1809 ||| ||| Sbjct 873 GTATAGTA 880 > AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2763256-2765351 REVERSE LENGTH=915 Length=915 Score = 204 bits (110), Expect = 3e-51 Identities = 198/240 (83%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 1570 ATGAAGATGCTCTAGCAATCGCAGAAAGCATGCCCGAACTACGCCACCTCCAGCTTTTTG 1629 |||| |||||| ||||||| || |||||||||||| |||||| ||||||||||| || || Sbjct 668 ATGATGATGCTTTAGCAATTGCTGAAAGCATGCCCAAACTACACCACCTCCAGC-TTATG 726 Query 1630 G-GAACATACTAACCAATGTGGGATTGAACGCCATTCTTGACGGTTGTCCTCACCTGGAA 1688 | |||| ||||||||| || ||||| |||||||| ||||||||||||||||||||| Sbjct 727 GCTAACAGACTAACCAACACAGGCTTGAATGCCATTCTCGACGGTTGTCCTCACCTGGAA 786 Query 1689 CACCTTGATCTACGCAAATGTTCCAACG-TTGATC-TTACCGGGGATCTAGAGAAGCGAT 1746 ||||||||| ||||||| |||| || | || | | || |||| |||| |||||||||| Sbjct 787 CACCTTGATGTACGCAAGTGTTTCAG-GATT-AGCCTTGTCGGGAATCTTGAGAAGCGAT 844 Query 1747 GCGTTG-AGAGGATCAAAGATTTGAAACGCCCCAATGACTCAACCGCTGGTCACCCATAT 1805 | ||| ||| ||||||||| |||| ||||||| |||||||||||| | | |||||||| Sbjct 845 GT-TTGGAGATGATCAAAGAGTTGAGACGCCCCGGTGACTCAACCGCAGATTACCCATAT 903 > AT4G03630.1 | Symbols: | RNI-like superfamily protein | chr4:1608750-1610037 FORWARD LENGTH=663 Length=663 Score = 143 bits (77), Expect = 7e-33 Identities = 341/464 (73%), Gaps = 35/464 (8%) Strand=Plus/Plus Query 357 TCAAGTAATCTGAGA-AGCCTTAGACTTG-TAAGATGCCATCAAATAACAGATAAGGGAG 414 ||||||||| ||||| | |||| |||||| |||| ||| |||||||||| | | |||| Sbjct 181 TCAAGTAATTTGAGACA-CCTTGGACTTGCTAAG-TGCGATCAAATAACGGGCATGGGA- 237 Query 415 TTG-CCGA-AGCAGTTGTGAAACTTCCATTGCTTGAAGACCTCGAGGTCTCGTACTGCTC 472 || | | || || ||||||||||||||||||||||||||||| | || ||||||| Sbjct 238 CTGTTC-ACAGAAGCCATGAAACTTCCATTGCTTGAAGACCTCGAGCTTTCATACTGCTT 296 Query 473 ATTTTCAGGAGAGTGTGTG-ACTGTTGTAGG-T-CAGTCTTGTCCA-CATCTGACGACAT 528 | | |||| || | || | | | |||| | | | |||| || ||| ||| ||||| Sbjct 297 AATCAAAGGAAAGAATTTGGAA-GCTATAGGCTTC-G-CTTG-CCTGCATTTGAAGACAT 352 Query 529 TGAAGCTAAACCGCCGACCTCGCGTCGAGTTTGTAATAAATATGCGTGATCATAATGCCA 588 ||||||||||| | | | | || |||| || | ||||||| ||||| Sbjct 353 TGAAGCTAAACTGTCAAGGTT---TCAAGTTCCCCGGCTTTACGTATGATCATGATGCCC 409 Query 589 TAG-CAATTGC-AGAAAGCATGCCTGAGCTACGCCACCTCCAGCTTTTAGGGAAC-GCAC 645 ||| || |||| | |||| ||||| || || || ||||||||||| |||||| | | Sbjct 410 TAGGCA-TTGCTA-AAAGAATGCCCGAACTGCGATGTCTCCAGCTTTTTGGGAACAG-AG 466 Query 646 TAACCA-ACACT-GGCTTGAACGCCATTCTT-GACAGTTGTACTCACCTGGACCATCTTG 702 || | | || | || |||||||| ||| || ||| ||||| |||||||||| || || | Sbjct 467 TATC-AGACG-TAGGGTTGAACGCGATT-TTCGACGGTTGTCCTCACCTGGAACACCTCG 523 Query 703 ATTTACGCCAGTGTTACAATATTAACCTTCTCGAGGATCTC-ATGAAGCAATGTGTTGAA 761 ||||||| ||||||| ||| ||||| ||| | | |||||| | ||||| ||| | || Sbjct 524 ATTTACGTCAGTGTTTCAACATTAATCTTGTAGGGGATCTGGA-GAAGCGTTGTATGGAG 582 Query 762 AGGATCAAATATTTGAGATGCCCCAATGACTCAA-TCGCTGATT 804 ||||||||| |||||||| ||||||| || |||| | ||||||| Sbjct 583 AGGATCAAAGATTTGAGACGCCCCAACGATTCAACT-GCTGATT 625 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92871008250 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5