BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943323
Length=1876
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05500.1 | Symbols: | pseudogene, F-box protein family, AtF... 394 2e-108
AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:2... 344 2e-93
AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2... 213 5e-54
AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2... 204 3e-51
AT4G03630.1 | Symbols: | RNI-like superfamily protein | chr4:1... 143 7e-33
> AT4G05500.1 | Symbols: | pseudogene, F-box protein family, AtFBL9/AtFBL23,
contains similarity to N7 protein GI:3273101
from (Medicago truncatula); blastp match of 39% identity and
1.6e-34 P-value to GP|3273101|emb|CAA76808.1||Y17613 N7 protein
{Medicago truncatula} | chr4:2780170-2782675 REVERSE LENGTH=2506
Length=2506
Score = 394 bits (213), Expect = 2e-108
Identities = 372/447 (83%), Gaps = 18/447 (4%)
Strand=Plus/Plus
Query 357 TCAAGTAATCTGAGAAGCCTTAGACTTGTAAGATGCCATCAAATAACAGATAAGGGAGTT 416
||||||||||||| ||||||| |||||||||| ||| || |||||||||| ||||||||
Sbjct 1982 TCAAGTAATCTGAAAAGCCTTGGACTTGTAAGGTGCTTTCCAATAACAGATGAGGGAGTT 2041
Query 417 GCCGAAGCAGTTGT-GAAACTTCCATTGCTTGAAGACCTCGAGGTCTCGTACTGCTCATT 475
||| |||||||| | |||| | || ||||||||| |||| ||||| || ||||||| ||
Sbjct 2042 GCCAAAGCAGTT-TCGAAAGTACCGTTGCTTGAATACCTTGAGGTTTCATACTGCTTGTT 2100
Query 476 TTCAGGAGAGTGTGTGACTGTTGTAGGTCAGTCTTGTCC-ACATCTGACGACATTGAAGC 534
||||||||||| | ||| | | |||| | ||||||||| | |||||| |||| ||||||
Sbjct 2101 TTCAGGAGAGTCTCTGAGAGATATAGGCCGGTCTTGTCCGA-ATCTGAAGACACTGAAGC 2159
Query 535 TAAACC--GCCGACCTCG-CGTCGA-GTTTGTAATAAATA-TGCG--TGATCATAATGCC 587
|||||| ||| ||| | || | |||| | ||||| || | |||| ||||||||
Sbjct 2160 TAAACCGAGCC--CCT-GAAATC-ATGTTT-T--CAAATAGTGGGTTTGATGATAATGCC 2212
Query 588 ATAGCAATTGCAGAAAGCATGCCTGAGCTACGCCACCTCCAGCTTTTAGGGAACGCACTA 647
| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 2213 AAAGCAATTGCAGAAAGCATGCCTGAACTACGCCACCTCCAGCTTTTAGGGAACGGGCTA 2272
Query 648 ACCAACACTGGCTTGAACGCCATTCTTGACAGTTGTACTCACCTGGACCATCTTGATTTA 707
||||| | |||||||||||||||||||| ||||| |||||||||| || |||||||||
Sbjct 2273 ACCAATAAGGGCTTGAACGCCATTCTTGATGGTTGTCCTCACCTGGAACACCTTGATTTA 2332
Query 708 CGCCAGTGTTACAATATTAACCTTCTCGAGGATCTCATGAAGCAATGTGTTGAAAGGATC 767
|||||||||| ||| || |||||| | | |||||||| ||| | |||| |||| ||||||
Sbjct 2333 CGCCAGTGTTTCAACATCAACCTTGTTGGGGATCTCAAGAAACGATGTTTTGAGAGGATC 2392
Query 768 AAATATTTGAGATGCCCCAATGACTCA 794
||| | |||||||||||||||||||||
Sbjct 2393 AAAGACTTGAGATGCCCCAATGACTCA 2419
> AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:21296833-21297858
REVERSE LENGTH=907
Length=907
Score = 344 bits (186), Expect = 2e-93
Identities = 533/694 (77%), Gaps = 49/694 (7%)
Strand=Plus/Plus
Query 1118 TGATATACTGGAAAATGCTCAAAAAGTGTGCAGATCGTGGCG-TCGCGTTTGTAAAGACC 1176
||| |||||||| || ||||| |||||||| |||||||| || | |||||||||||||
Sbjct 15 TGAGATACTGGAGAACGCTCAGAAAGTGTGTAGATCGTGACGAT-ATGTTTGTAAAGACC 73
Query 1177 CCTCGATGTGGCGGAAGATTGACATGGAC-AACCTCGGAG--ACTTGGGAGCC---A-TG 1229
| || || ||||| || || ||||| | | || || ||| || | || | ||
Sbjct 74 CATCCATATGGCGTAAAATCGACAT-G-CGAATCT-TGAGTTAC-AACAAACCAGTACTG 129
Query 1230 GGGTACGATCTTGAGATC-ATGTGTCGTCATGCAGTAGATCGTAGCCAGGGCGGCTTGGT 1288
| | || ||| |||| | || |||||| | || || ||||||||| |||| |||||| |
Sbjct 130 GTGAACAATCCTGAG-GCGATATGTCGTAACGCCGTTGATCGTAGCGAGGGTGGCTTGCT 188
Query 1289 TGAGATTGACGTTTGGTACTTCGGTACTGATGAACTCCTCA-ATTACATTGCCGACAGGT 1347
||||| || || || ||||||| | |||| ||||| | | ||||| || || ||||
Sbjct 189 GGAGATCAACATTGGGGACTTCGGGAGTGATTCTCTCCTTACA-TACATCGCGGAGAGGT 247
Query 1348 CGAGTAATCTGAGAACCCTTAGACTTATAATGTGCT-ATCCAATAGCAGACGAAGGATTT 1406
| |||||||| |||| |||||||| ||||||||| | |||| ||||||| ||||||
Sbjct 248 CAAGTAATCTTAGAAGCCTTAGAC---TAATGTGCTCA-GAAATAACAGACGATGGATTT 303
Query 1407 -ATCGAAGCAGTTGTGAAGCTTCCATTGATTGAATACCTCGAGCTTTCA-CACTGCTCCT 1464
|| ||||||||||||| |||||| || ||||| | || ||| ||||| | | || |
Sbjct 304 GTTC-AAGCAGTTGTGAAACTTCCAATGCTTGAAGAGCTTGAGGTTTCAGGAAT-ATCAT 361
Query 1465 TGTCAGGAGAGTCTCTGAAAGTTGTAGGTCAGTCTTGTCCAAATCTGAAGACATTGAAGC 1524
|||||||||||||| ||||| ||| ||| | |||||||||||||||||||||||||| ||
Sbjct 362 TGTCAGGAGAGTCTATGAAACTTGCAGGGCTGTCTTGTCCAAATCTGAAGACATTGATGC 421
Query 1525 TAAACTCCGAGCCTGACCCCAAATTTAATGAT--GATGAGTTTAATAATGAAGATGCTC- 1581
|||| || |||| | | |||| | | ||||| | || || | ||||| |
Sbjct 422 TAAA--CC--GCCT---CTTTTACTTAA-GTTCGGATGA---TGATGATCATGATGC-CA 469
Query 1582 TAGCAATCGCAGAAAGCATGCCCGAACTACGCCACCTCCAGCTTTTTGGGAACATACTAA 1641
||||||| |||||||||||||| |||||||||| |||||||||| |||||||| |||||
Sbjct 470 TAGCAATTGCAGAAAGCATGCCTAAACTACGCCATCTCCAGCTTTGTGGGAACAAACTAA 529
Query 1642 CCAATGTGGGATTGAACGCCATTCTTGACGGTTGTCCTCACCTGGAACACCTTGATCTAC 1701
|||| || || |||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 530 CCAAAACAGGCTTAAACGCCATTCTTGACGGTTGTCCTCACCTGGAACACCTCGATTTAC 589
Query 1702 GCAAATGT-TCCAACGTTGATCTTACCGGGGATCTAGAGAAGCGATGCGTTGAGAGGATC 1760
|| ||||| || ||| ||| || ||| ||||||||||||| || |||||| ||
Sbjct 590 GCCAATGTATC-AACCTTG-TC-----GGGAATCTAGAGAAGCGTTGTTTTGAGAAAATT 642
Query 1761 AAAGATTTGAAACGCCCCAATGACTCAACCGCTG 1794
|||||||||| ||||| |||||| || ||| |||
Sbjct 643 AAAGATTTGAGACGCCACAATGATTCTACCTCTG 676
Score = 263 bits (142), Expect = 5e-69
Identities = 360/460 (78%), Gaps = 36/460 (8%)
Strand=Plus/Plus
Query 357 TCAAGTAATCTGAGAAGCCTTAGACTTGTAA-GATGC-CATCAAATAACAGATAAGGGAG 414
||||||||||| ||||||||||||| ||| | ||| || |||||||||| | |||
Sbjct 247 TCAAGTAATCTTAGAAGCCTTAGAC---TAATG-TGCTCA-GAAATAACAGACGATGGAT 301
Query 415 TTG-CCGAAGCAGTTGTGAAACTTCCATTGCTTGAAGACCTCGAGGTCTC-GTACTGCTC 472
||| | |||||||||||||||||||| |||||||||| || ||||| || | | | ||
Sbjct 302 TTGTTC-AAGCAGTTGTGAAACTTCCAATGCTTGAAGAGCTTGAGGTTTCAGGAAT-ATC 359
Query 473 ATTTTCAGGAGAGTGTGTGACTGTTGTAGGTCAGTCTTGTCCACATCTGACGACATTGAA 532
||| |||||||||| | ||| ||| ||| | |||||||||| |||||| ||||||||
Sbjct 360 ATTGTCAGGAGAGTCTATGAAACTTGCAGGGCTGTCTTGTCCAAATCTGAAGACATTGAT 419
Query 533 GCTAAACCGCCGAC-CTCGCGTCGAGTTTGTAATAAATATGCGTGATCATAATGCCATAG 591
||||||||||| | | | | |||| | || ||| ||||||| |||||||||
Sbjct 420 GCTAAACCGCC-TCTTTTAC-TTAAGTTCG-GAT---GATG-ATGATCATGATGCCATAG 472
Query 592 CAATTGCAGAAAGCATGCCTGAGCTACGCCACCTCCAGCTTT-TAGGGAACGCACTAACC 650
|||||||||||||||||||| | |||||||| |||||||||| | |||||| |||||||
Sbjct 473 CAATTGCAGAAAGCATGCCTAAACTACGCCATCTCCAGCTTTGT-GGGAACAAACTAACC 531
Query 651 AACACTGGCTTGAACGCCATTCTTGACAGTTGTACTCACCTGGACCATCTTGATTTACGC 710
|| || ||||| ||||||||||||||| ||||| |||||||||| || || |||||||||
Sbjct 532 AAAACAGGCTTAAACGCCATTCTTGACGGTTGTCCTCACCTGGAACACCTCGATTTACGC 591
Query 711 CAGTGTTACAATATTAACCTTCTCGAGGA-TCTC-ATGAAGCAATGTGTTGA-AAGGATC 767
|| ||| | | |||||| ||| ||| ||| | ||||| ||| |||| || ||
Sbjct 592 CAATGT-A---TC--AACCTTGTCG-GGAATCTAGA-GAAGCGTTGTTTTGAGAAA-ATT 642
Query 768 AAATATTTGAGATGCCCCAATGACTCAA--TC-GCTGATT 804
||| |||||||| ||| |||||| || | || |||||||
Sbjct 643 AAAGATTTGAGACGCCACAATGATTCTACCTCTGCTGATT 682
> AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2765962-2767957
REVERSE LENGTH=930
Length=930
Score = 213 bits (115), Expect = 5e-54
Identities = 206/248 (83%), Gaps = 13/248 (5%)
Strand=Plus/Plus
Query 1570 ATGAAGATGCTCTAGCAATCGCAGAAAGCATGCCCGAACTACGCCACCTCCAGCTTTTTG 1629
|||| ||||||||||||||||| |||||||||||| |||||||||||||||||| || ||
Sbjct 638 ATGATGATGCTCTAGCAATCGCTGAAAGCATGCCCAAACTACGCCACCTCCAGC-TTATG 696
Query 1630 GG-AACATACTAACCAA-TGTGGGATTGAACGCCATTCTTGACGGTTGTCCTCACCTGGA 1687
|| ||| ||||||||| | || ||||| |||||||||||||||||||||||||||||
Sbjct 697 GGTAACGGACTAACCAACACT-GGCTTGAATGCCATTCTTGACGGTTGTCCTCACCTGGA 755
Query 1688 A---CACCTTGATCTACGCAAATGTTCCAACGTTGATCTTACCGGGGATCTAGAGAAGCG 1744
| ||||||||| ||||||| |||| |||| || | ||| |||| |||| || |||||
Sbjct 756 AGAACACCTTGATGTACGCAAGTGTTTCAACATTAACCTTGTCGGGAATCTTGAAAAGCG 815
Query 1745 ATGCGTTGA-GAGGATCAAAGATTTGAAACG-CCCCAATGACTCAACCGCTGG-TCACCC 1801
||| | || |||||||||||| |||| ||| ||||| ||||||||| || || | ||||
Sbjct 816 ATGTAT-GAAGAGGATCAAAGAGTTGAGACGGCCCCA-TGACTCAACTGC-GGATTACCC 872
Query 1802 ATATGGTA 1809
||| |||
Sbjct 873 GTATAGTA 880
> AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2763256-2765351
REVERSE LENGTH=915
Length=915
Score = 204 bits (110), Expect = 3e-51
Identities = 198/240 (83%), Gaps = 8/240 (3%)
Strand=Plus/Plus
Query 1570 ATGAAGATGCTCTAGCAATCGCAGAAAGCATGCCCGAACTACGCCACCTCCAGCTTTTTG 1629
|||| |||||| ||||||| || |||||||||||| |||||| ||||||||||| || ||
Sbjct 668 ATGATGATGCTTTAGCAATTGCTGAAAGCATGCCCAAACTACACCACCTCCAGC-TTATG 726
Query 1630 G-GAACATACTAACCAATGTGGGATTGAACGCCATTCTTGACGGTTGTCCTCACCTGGAA 1688
| |||| ||||||||| || ||||| |||||||| |||||||||||||||||||||
Sbjct 727 GCTAACAGACTAACCAACACAGGCTTGAATGCCATTCTCGACGGTTGTCCTCACCTGGAA 786
Query 1689 CACCTTGATCTACGCAAATGTTCCAACG-TTGATC-TTACCGGGGATCTAGAGAAGCGAT 1746
||||||||| ||||||| |||| || | || | | || |||| |||| ||||||||||
Sbjct 787 CACCTTGATGTACGCAAGTGTTTCAG-GATT-AGCCTTGTCGGGAATCTTGAGAAGCGAT 844
Query 1747 GCGTTG-AGAGGATCAAAGATTTGAAACGCCCCAATGACTCAACCGCTGGTCACCCATAT 1805
| ||| ||| ||||||||| |||| ||||||| |||||||||||| | | ||||||||
Sbjct 845 GT-TTGGAGATGATCAAAGAGTTGAGACGCCCCGGTGACTCAACCGCAGATTACCCATAT 903
> AT4G03630.1 | Symbols: | RNI-like superfamily protein | chr4:1608750-1610037
FORWARD LENGTH=663
Length=663
Score = 143 bits (77), Expect = 7e-33
Identities = 341/464 (73%), Gaps = 35/464 (8%)
Strand=Plus/Plus
Query 357 TCAAGTAATCTGAGA-AGCCTTAGACTTG-TAAGATGCCATCAAATAACAGATAAGGGAG 414
||||||||| ||||| | |||| |||||| |||| ||| |||||||||| | | ||||
Sbjct 181 TCAAGTAATTTGAGACA-CCTTGGACTTGCTAAG-TGCGATCAAATAACGGGCATGGGA- 237
Query 415 TTG-CCGA-AGCAGTTGTGAAACTTCCATTGCTTGAAGACCTCGAGGTCTCGTACTGCTC 472
|| | | || || ||||||||||||||||||||||||||||| | || |||||||
Sbjct 238 CTGTTC-ACAGAAGCCATGAAACTTCCATTGCTTGAAGACCTCGAGCTTTCATACTGCTT 296
Query 473 ATTTTCAGGAGAGTGTGTG-ACTGTTGTAGG-T-CAGTCTTGTCCA-CATCTGACGACAT 528
| | |||| || | || | | | |||| | | | |||| || ||| ||| |||||
Sbjct 297 AATCAAAGGAAAGAATTTGGAA-GCTATAGGCTTC-G-CTTG-CCTGCATTTGAAGACAT 352
Query 529 TGAAGCTAAACCGCCGACCTCGCGTCGAGTTTGTAATAAATATGCGTGATCATAATGCCA 588
||||||||||| | | | | || |||| || | ||||||| |||||
Sbjct 353 TGAAGCTAAACTGTCAAGGTT---TCAAGTTCCCCGGCTTTACGTATGATCATGATGCCC 409
Query 589 TAG-CAATTGC-AGAAAGCATGCCTGAGCTACGCCACCTCCAGCTTTTAGGGAAC-GCAC 645
||| || |||| | |||| ||||| || || || ||||||||||| |||||| | |
Sbjct 410 TAGGCA-TTGCTA-AAAGAATGCCCGAACTGCGATGTCTCCAGCTTTTTGGGAACAG-AG 466
Query 646 TAACCA-ACACT-GGCTTGAACGCCATTCTT-GACAGTTGTACTCACCTGGACCATCTTG 702
|| | | || | || |||||||| ||| || ||| ||||| |||||||||| || || |
Sbjct 467 TATC-AGACG-TAGGGTTGAACGCGATT-TTCGACGGTTGTCCTCACCTGGAACACCTCG 523
Query 703 ATTTACGCCAGTGTTACAATATTAACCTTCTCGAGGATCTC-ATGAAGCAATGTGTTGAA 761
||||||| ||||||| ||| ||||| ||| | | |||||| | ||||| ||| | ||
Sbjct 524 ATTTACGTCAGTGTTTCAACATTAATCTTGTAGGGGATCTGGA-GAAGCGTTGTATGGAG 582
Query 762 AGGATCAAATATTTGAGATGCCCCAATGACTCAA-TCGCTGATT 804
||||||||| |||||||| ||||||| || |||| | |||||||
Sbjct 583 AGGATCAAAGATTTGAGACGCCCCAACGATTCAACT-GCTGATT 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92871008250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5