BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943324
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2... 411 8e-114
AT4G03630.1 | Symbols: | RNI-like superfamily protein | chr4:1... 163 2e-39
AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:2... 156 4e-37
> AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2763256-2765351
REVERSE LENGTH=915
Length=915
Score = 411 bits (222), Expect = 8e-114
Identities = 641/830 (77%), Gaps = 81/830 (10%)
Strand=Plus/Plus
Query 45 AAAAAAGAAAAGGAGAACCTCCTCTACGTCGCA---GATGAAAGACG-AAGAGGC-AAGA 99
||| ||||||| || ||||||| |||||| | | | || || | |||| || ||||
Sbjct 75 AAACAAGAAAACGACAACCTCCACTACGTTGGAGTCGTTG-CTGATGAAAGA-GCGAAGA 132
Query 100 AACTGGGCGGATCTTCCGTCGGAGTTGACGTA-TTTGATCCTGATCCGTCTTAG-CGGAA 157
||||||| |||||||||| ||||| ||||| | || ||||||| | |||||||| | | |
Sbjct 133 AACTGGGTGGATCTTCCGCCGGAGCTGACG-ACTTCGATCCTGCTGCGTCTTAGCCTG-A 190
Query 158 TTGATATACTGGACAACGCTCAGAAGGTGTG-CAGGCAGTGGCGATGCGTATGTAAAGAC 216
|||||||||||||||||||||||||||||| | | |||||||| || | |||||||||
Sbjct 191 CTGATATACTGGACAACGCTCAGAAGGTGTGTAAAG-AGTGGCGACGCATTTGTAAAGAC 249
Query 217 CCTTCGATGTGGCAGAAAATCGACATGAGAAGCCTG-ATCA-GAAACGAGAGAATGCTCG 274
||||||||||||| ||||||| ||| | | || ||| ||| | || | | | | |
Sbjct 250 CCTTCGATGTGGCGGAAAATCAACACGCG-AGACTGCCTCATG-TAC---A-ACT--TTG 301
Query 275 ACCGCTTAGCT-AGCATGTGCCGTCACGCCGTTGATCGT-AGCCAGGGTGGTTTGGTCGA 332
| || | | ||||||||||||||| ||||||| | ||||||||||| ||| | ||
Sbjct 302 A---TTTCG-TGAGCATGTGCCGTCACATTGTTGATC-TCAGCCAGGGTGGCTTGCTAGA 356
Query 333 -ACTCCACGTTG--GGA-GCTTCGCCAGTGATGATCTCCTCGA-CTACATCGCAGATAGA 387
| || |||||| | | |||| || ||| ||||||| | |||||| | ||
Sbjct 357 GA-TCAACGTTGATGAACACTTCTTGAGCGATTCTCTCCTC-AGCTACAT----TACCGA 410
Query 388 TCAAGGAATCTGAGAAGTCTTGGACTTGGAATGTGCTTTCCAAGGGCGACGAACCCAGGA 447
| ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 411 T--AGGAATCTGAGAAGTCTTGGACTTGGAATGTGCTTTCCAAGGGTGACGAAACTAGGA 468
Query 448 CTTGTGGACACAATCACAAAACTTCTATTGCTTGAAACCCTCGAGGTCTCACACTCATGT 507
||||| || |||| ||||| ||| |||||||||||||||||||||| | |||||||||
Sbjct 469 GTTGTGAACGCAATTGCAAAAATTCCATTGCTTGAAACCCTCGAGGTCACTCACTCATGT 528
Query 508 TTAATTCTGGATTTCAAAGCTATAGGTCAGGCTTGCCCACAGCTAAAGACATTCAAGTTA 567
||| |||||||| ||||||||||| || ||||||||||||||||||||||| ||| ||
Sbjct 529 ATAAAACTGGATTTAAAAGCTATAGGCCACGCTTGCCCACAGCTAAAGACATTGAAGCTA 588
Query 568 AACTCCTCAGGGCGTTTCTGG--AGC---T--C---T----C-GCAAC-T-TTCG-C-A- 607
||||||| ||| || | ||| ||| | | | | ||||| | || | | |
Sbjct 589 AACTCCTTAGGCCGCCTATGGCCAGCCAGTGACAAGTATGACAGCAACGTGTTAGACGAT 648
Query 608 A-----C-TCTCGCAATGATGATTATTATGCCCTAGAAATCGCTGAAAGCATGCC-AGAA 660
| | ||||| |||| |||| || |||| ||| ||| |||||||||||||| | ||
Sbjct 649 ATGGGGCCTCTCG-AATG-TGATGATGATGCTTTAGCAATTGCTGAAAGCATGCCCA-AA 705
Query 661 CTACGCCACCTCTACCTTTATGGG-AACAAACTAAGTGACATAGGCTTGAACGCCATTCT 719
|||| ||||||| | ||| |||| |||| ||||| ||| ||||||||| ||||||||
Sbjct 706 CTACACCACCTCCAGCTT-ATGGCTAACAGACTAACCAACACAGGCTTGAATGCCATTCT 764
Query 720 TAACGGTTGTCCTCACCTGGAACACCTCGA-GTTACATAAGTGTTTCAAGCTTAAACTTG 778
||||||||||||||||||||||||| || || || |||||||||| | ||| ||||
Sbjct 765 CGACGGTTGTCCTCACCTGGAACACCTTGATGT-ACGCAAGTGTTTCAGGATTAGCCTTG 823
Query 779 TCGGAGA-TCTGGAGAAGCGATGTTATG-AGAGGATCAAATATTTTAGAC 826
|||| || ||| ||||||||||||| || ||| ||||||| | || ||||
Sbjct 824 TCGG-GAATCTTGAGAAGCGATGTT-TGGAGATGATCAAAGAGTTGAGAC 871
> AT4G03630.1 | Symbols: | RNI-like superfamily protein | chr4:1608750-1610037
FORWARD LENGTH=663
Length=663
Score = 163 bits (88), Expect = 2e-39
Identities = 175/217 (81%), Gaps = 6/217 (3%)
Strand=Plus/Plus
Query 620 ATGATTATTATGCCCTAGAAATCGCTGAAAGCATGCCAGAACTACGCCACCTCTACCTTT 679
||||| || ||||||||| || ||| |||| ||||| ||||| || ||| | ||||
Sbjct 395 ATGATCATGATGCCCTAGGCATTGCTAAAAGAATGCCCGAACTGCGATGTCTCCAGCTTT 454
Query 680 ATGGGAACAAACTAAGTGACATAGGCTTGAACGCCATTCTT-AACGGTTGTCCTCACCTG 738
|||||||| | || ||| |||| |||||||| ||| || |||||||||||||||||
Sbjct 455 TTGGGAACAGAGTATCAGACGTAGGGTTGAACGCGATT-TTCGACGGTTGTCCTCACCTG 513
Query 739 GAACACCTCGAGTTACATAAGTGTTTCAAGC-TTAAACTTGTCGGAGATCTGGAGAAGCG 797
||||||||||| |||| | |||||||||| | |||| ||||| || ||||||||||||||
Sbjct 514 GAACACCTCGATTTACGTCAGTGTTTCAA-CATTAATCTTGTAGGGGATCTGGAGAAGCG 572
Query 798 ATGTTATG-AGAGGATCAAATATTTTAGACACACCAA 833
||| ||| ||||||||||| |||| |||| | ||||
Sbjct 573 TTGT-ATGGAGAGGATCAAAGATTTGAGACGCCCCAA 608
> AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:21296833-21297858
REVERSE LENGTH=907
Length=907
Score = 156 bits (84), Expect = 4e-37
Identities = 172/213 (81%), Gaps = 12/213 (6%)
Strand=Plus/Plus
Query 617 ATGATGATTATTATGCCCTAGAAATCGCTGAAAGCATGCC-AGAACTACGCCACCTCTAC 675
|||||||| || ||||| ||| ||| || ||||||||||| | |||||||||| ||| |
Sbjct 452 ATGATGATCATGATGCCATAGCAATTGCAGAAAGCATGCCTA-AACTACGCCATCTCCAG 510
Query 676 CTTTATGGGAACAAACTAAGTGACATAGGCTTGAACGCCATTCTTAACGGTTGTCCTCAC 735
|||| |||||||||||||| | | |||||| |||||||||||| ||||||||||||||
Sbjct 511 CTTTGTGGGAACAAACTAACCAAAACAGGCTTAAACGCCATTCTTGACGGTTGTCCTCAC 570
Query 736 CTGGAACACCTCGAGTTACAT-AAGTGTTTCAAGCTTAAACTTGTCGGAGA-TCTGGAGA 793
|||||||||||||| |||| || ||| |||| | |||||||| || ||| ||||
Sbjct 571 CTGGAACACCTCGATTTACGCCAA-TGTATCAA-C-----CTTGTCGG-GAATCTAGAGA 622
Query 794 AGCGATGTTATGAGAGGATCAAATATTTTAGAC 826
|||| |||| ||||| || ||| |||| ||||
Sbjct 623 AGCGTTGTTTTGAGAAAATTAAAGATTTGAGAC 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41945512745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5