BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943324 Length=860 Score E Sequences producing significant alignments: (Bits) Value AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2... 411 8e-114 AT4G03630.1 | Symbols: | RNI-like superfamily protein | chr4:1... 163 2e-39 AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:2... 156 4e-37 > AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2763256-2765351 REVERSE LENGTH=915 Length=915 Score = 411 bits (222), Expect = 8e-114 Identities = 641/830 (77%), Gaps = 81/830 (10%) Strand=Plus/Plus Query 45 AAAAAAGAAAAGGAGAACCTCCTCTACGTCGCA---GATGAAAGACG-AAGAGGC-AAGA 99 ||| ||||||| || ||||||| |||||| | | | || || | |||| || |||| Sbjct 75 AAACAAGAAAACGACAACCTCCACTACGTTGGAGTCGTTG-CTGATGAAAGA-GCGAAGA 132 Query 100 AACTGGGCGGATCTTCCGTCGGAGTTGACGTA-TTTGATCCTGATCCGTCTTAG-CGGAA 157 ||||||| |||||||||| ||||| ||||| | || ||||||| | |||||||| | | | Sbjct 133 AACTGGGTGGATCTTCCGCCGGAGCTGACG-ACTTCGATCCTGCTGCGTCTTAGCCTG-A 190 Query 158 TTGATATACTGGACAACGCTCAGAAGGTGTG-CAGGCAGTGGCGATGCGTATGTAAAGAC 216 |||||||||||||||||||||||||||||| | | |||||||| || | ||||||||| Sbjct 191 CTGATATACTGGACAACGCTCAGAAGGTGTGTAAAG-AGTGGCGACGCATTTGTAAAGAC 249 Query 217 CCTTCGATGTGGCAGAAAATCGACATGAGAAGCCTG-ATCA-GAAACGAGAGAATGCTCG 274 ||||||||||||| ||||||| ||| | | || ||| ||| | || | | | | | Sbjct 250 CCTTCGATGTGGCGGAAAATCAACACGCG-AGACTGCCTCATG-TAC---A-ACT--TTG 301 Query 275 ACCGCTTAGCT-AGCATGTGCCGTCACGCCGTTGATCGT-AGCCAGGGTGGTTTGGTCGA 332 | || | | ||||||||||||||| ||||||| | ||||||||||| ||| | || Sbjct 302 A---TTTCG-TGAGCATGTGCCGTCACATTGTTGATC-TCAGCCAGGGTGGCTTGCTAGA 356 Query 333 -ACTCCACGTTG--GGA-GCTTCGCCAGTGATGATCTCCTCGA-CTACATCGCAGATAGA 387 | || |||||| | | |||| || ||| ||||||| | |||||| | || Sbjct 357 GA-TCAACGTTGATGAACACTTCTTGAGCGATTCTCTCCTC-AGCTACAT----TACCGA 410 Query 388 TCAAGGAATCTGAGAAGTCTTGGACTTGGAATGTGCTTTCCAAGGGCGACGAACCCAGGA 447 | ||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| Sbjct 411 T--AGGAATCTGAGAAGTCTTGGACTTGGAATGTGCTTTCCAAGGGTGACGAAACTAGGA 468 Query 448 CTTGTGGACACAATCACAAAACTTCTATTGCTTGAAACCCTCGAGGTCTCACACTCATGT 507 ||||| || |||| ||||| ||| |||||||||||||||||||||| | ||||||||| Sbjct 469 GTTGTGAACGCAATTGCAAAAATTCCATTGCTTGAAACCCTCGAGGTCACTCACTCATGT 528 Query 508 TTAATTCTGGATTTCAAAGCTATAGGTCAGGCTTGCCCACAGCTAAAGACATTCAAGTTA 567 ||| |||||||| ||||||||||| || ||||||||||||||||||||||| ||| || Sbjct 529 ATAAAACTGGATTTAAAAGCTATAGGCCACGCTTGCCCACAGCTAAAGACATTGAAGCTA 588 Query 568 AACTCCTCAGGGCGTTTCTGG--AGC---T--C---T----C-GCAAC-T-TTCG-C-A- 607 ||||||| ||| || | ||| ||| | | | | ||||| | || | | | Sbjct 589 AACTCCTTAGGCCGCCTATGGCCAGCCAGTGACAAGTATGACAGCAACGTGTTAGACGAT 648 Query 608 A-----C-TCTCGCAATGATGATTATTATGCCCTAGAAATCGCTGAAAGCATGCC-AGAA 660 | | ||||| |||| |||| || |||| ||| ||| |||||||||||||| | || Sbjct 649 ATGGGGCCTCTCG-AATG-TGATGATGATGCTTTAGCAATTGCTGAAAGCATGCCCA-AA 705 Query 661 CTACGCCACCTCTACCTTTATGGG-AACAAACTAAGTGACATAGGCTTGAACGCCATTCT 719 |||| ||||||| | ||| |||| |||| ||||| ||| ||||||||| |||||||| Sbjct 706 CTACACCACCTCCAGCTT-ATGGCTAACAGACTAACCAACACAGGCTTGAATGCCATTCT 764 Query 720 TAACGGTTGTCCTCACCTGGAACACCTCGA-GTTACATAAGTGTTTCAAGCTTAAACTTG 778 ||||||||||||||||||||||||| || || || |||||||||| | ||| |||| Sbjct 765 CGACGGTTGTCCTCACCTGGAACACCTTGATGT-ACGCAAGTGTTTCAGGATTAGCCTTG 823 Query 779 TCGGAGA-TCTGGAGAAGCGATGTTATG-AGAGGATCAAATATTTTAGAC 826 |||| || ||| ||||||||||||| || ||| ||||||| | || |||| Sbjct 824 TCGG-GAATCTTGAGAAGCGATGTT-TGGAGATGATCAAAGAGTTGAGAC 871 > AT4G03630.1 | Symbols: | RNI-like superfamily protein | chr4:1608750-1610037 FORWARD LENGTH=663 Length=663 Score = 163 bits (88), Expect = 2e-39 Identities = 175/217 (81%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 620 ATGATTATTATGCCCTAGAAATCGCTGAAAGCATGCCAGAACTACGCCACCTCTACCTTT 679 ||||| || ||||||||| || ||| |||| ||||| ||||| || ||| | |||| Sbjct 395 ATGATCATGATGCCCTAGGCATTGCTAAAAGAATGCCCGAACTGCGATGTCTCCAGCTTT 454 Query 680 ATGGGAACAAACTAAGTGACATAGGCTTGAACGCCATTCTT-AACGGTTGTCCTCACCTG 738 |||||||| | || ||| |||| |||||||| ||| || ||||||||||||||||| Sbjct 455 TTGGGAACAGAGTATCAGACGTAGGGTTGAACGCGATT-TTCGACGGTTGTCCTCACCTG 513 Query 739 GAACACCTCGAGTTACATAAGTGTTTCAAGC-TTAAACTTGTCGGAGATCTGGAGAAGCG 797 ||||||||||| |||| | |||||||||| | |||| ||||| || |||||||||||||| Sbjct 514 GAACACCTCGATTTACGTCAGTGTTTCAA-CATTAATCTTGTAGGGGATCTGGAGAAGCG 572 Query 798 ATGTTATG-AGAGGATCAAATATTTTAGACACACCAA 833 ||| ||| ||||||||||| |||| |||| | |||| Sbjct 573 TTGT-ATGGAGAGGATCAAAGATTTGAGACGCCCCAA 608 > AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:21296833-21297858 REVERSE LENGTH=907 Length=907 Score = 156 bits (84), Expect = 4e-37 Identities = 172/213 (81%), Gaps = 12/213 (6%) Strand=Plus/Plus Query 617 ATGATGATTATTATGCCCTAGAAATCGCTGAAAGCATGCC-AGAACTACGCCACCTCTAC 675 |||||||| || ||||| ||| ||| || ||||||||||| | |||||||||| ||| | Sbjct 452 ATGATGATCATGATGCCATAGCAATTGCAGAAAGCATGCCTA-AACTACGCCATCTCCAG 510 Query 676 CTTTATGGGAACAAACTAAGTGACATAGGCTTGAACGCCATTCTTAACGGTTGTCCTCAC 735 |||| |||||||||||||| | | |||||| |||||||||||| |||||||||||||| Sbjct 511 CTTTGTGGGAACAAACTAACCAAAACAGGCTTAAACGCCATTCTTGACGGTTGTCCTCAC 570 Query 736 CTGGAACACCTCGAGTTACAT-AAGTGTTTCAAGCTTAAACTTGTCGGAGA-TCTGGAGA 793 |||||||||||||| |||| || ||| |||| | |||||||| || ||| |||| Sbjct 571 CTGGAACACCTCGATTTACGCCAA-TGTATCAA-C-----CTTGTCGG-GAATCTAGAGA 622 Query 794 AGCGATGTTATGAGAGGATCAAATATTTTAGAC 826 |||| |||| ||||| || ||| |||| |||| Sbjct 623 AGCGTTGTTTTGAGAAAATTAAAGATTTGAGAC 655 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41945512745 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5