BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943328
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2... 313 2e-84
> AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2763256-2765351
REVERSE LENGTH=915
Length=915
Score = 313 bits (169), Expect = 2e-84
Identities = 439/562 (78%), Gaps = 48/562 (9%)
Strand=Plus/Plus
Query 41 AAAAAAGAAAATGAGAACCTCCTCTACG-T--CGCCGATGAAAGACG-AAGAGCCAAGAA 96
||| ||||||| || ||||||| ||||| | | || || || | |||||| |||||
Sbjct 75 AAACAAGAAAACGACAACCTCCACTACGTTGGAGTCGTTG-CTGATGAAAGAGCGAAGAA 133
Query 97 ACTGGGTGGATCTTCCGTCGGAGTTGACGTCTTTGATCCTGATCCGTCTTAGCGTGACTG 156
||||||||||||||||| ||||| ||||| ||| ||||||| | ||||||||| ||||||
Sbjct 134 ACTGGGTGGATCTTCCGCCGGAGCTGACGACTTCGATCCTGCTGCGTCTTAGCCTGACTG 193
Query 157 ATATTCTGGAAAACGCTCGGAAGGTGTGCAGCCCGTGGCGACGCATCTGTAAAGACCCTT 216
|||| ||||| ||||||| ||||||||| | |||||||||||| |||||||||||||
Sbjct 194 ATATACTGGACAACGCTCAGAAGGTGTGTAAAGAGTGGCGACGCATTTGTAAAGACCCTT 253
Query 217 CGATGTGGCGGAAAATCGACATGCGAGACTTGGCAAACCGCGGAATATTGTTCAAGTACA 276
||||||||||||||||| ||| |||||||| | | | | | | || ||| |
Sbjct 254 CGATGTGGCGGAAAATCAACACGCGAGACT-G-C---CT-C--A-T---GTACAACTT-- 299
Query 277 ATGCAGATAGCATGCGCCGCAGGTGCCGTGACGCTGTTGATCTCAGCCAGGGCGGCTTGC 336
|| | | | || || | ||||||| || |||||||||||||||||| |||||||
Sbjct 300 -TG-ATTTCG--TGAGC---ATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGCTTGC 352
Query 337 TAGAGATCAAAATTGAT---CGCTTCGTGAGCGATTCTCTCCTCAGCTACATCGCCGATA 393
|||||||||| ||||| | |||| ||||||||||||||||||||||||| ||||||
Sbjct 353 TAGAGATCAACGTTGATGAACACTTCTTGAGCGATTCTCTCCTCAGCTACATTACCGATA 412
Query 394 GATCAAGTAATCTGAAAAGTTTTGCACTTCCAGTCTG-TTACCCATCGATAAC-AA-CGA 450
| | ||||||| |||| ||| |||| | | || || || | | | || || |
Sbjct 413 G-----G-AATCTGAGAAGTCTTGGACTTGGAATGTGCTTTCCAAGGG-TGACGAAAC-- 463
Query 451 TAGAAGAACTTGTTAACGCAATCGCGAAATTTCCATTTCTTGAAACCCTCGAGTTCT-TC 509
||| || |||| |||||||| || ||| ||||||| ||||||||||||||| || ||
Sbjct 464 TAGGAG---TTGTGAACGCAATTGCAAAAATTCCATTGCTTGAAACCCTCGAGGTCACTC 520
Query 510 GACTTATTGTTTATA-CTGGATTTGAAAGCTATAGGCCACGCTTGCCCACAGCTAAAGAC 568
||| || || || | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 521 -ACTCAT-GTATAAAACTGGATTTAAAAGCTATAGGCCACGCTTGCCCACAGCTAAAGAC 578
Query 569 ATTGAAGATAAACTTCTCAGGC 590
||||||| |||||| || ||||
Sbjct 579 ATTGAAGCTAAACTCCTTAGGC 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37826312691
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5