BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943334

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G03620.1 | Symbols:  | myosin heavy chain-related | chr4:160...  65.8    6e-10


> AT4G03620.1 | Symbols:  | myosin heavy chain-related | chr4:1607040-1608665 
REVERSE LENGTH=1029
Length=1029

 Score = 65.8 bits (35),  Expect = 6e-10
 Identities = 39/41 (95%), Gaps = 0/41 (0%)
 Strand=Plus/Minus

Query  94   GCGTGATTGAAATACTTGAAAACGCTCAGAAAGTGTGCAGA  134
            ||||| |||| ||||||||||||||||||||||||||||||
Sbjct  50   GCGTGGTTGAGATACTTGAAAACGCTCAGAAAGTGTGCAGA  10



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34510858989


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5