BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943335
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03635.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 713 0.0
AT4G05500.1 | Symbols: | pseudogene, F-box protein family, AtF... 399 2e-110
> AT4G03635.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RNI-like superfamily protein (TAIR:AT4G05470.1); Has
118 Blast hits to 113 proteins in 8 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:1611752-1612756
FORWARD LENGTH=693
Length=693
Score = 713 bits (386), Expect = 0.0
Identities = 480/525 (91%), Gaps = 7/525 (1%)
Strand=Plus/Plus
Query 85 TCCTCCGCCGTTGAAAGAAGGAGAATCCCA-AAACTGGGCGGAGATTCCGCCGGAGTTAA 143
||||| |||||||||||| ||||| | ||| ||||||||||||| |||||||||| |||
Sbjct 27 TCCTCTGCCGTTGAAAGACGGAGAGT-CCAGAAACTGGGCGGAGCTTCCGCCGGAACTAA 85
Query 144 CATCTTCGATTCTGCTCCATCTCAGCACTATTGAGATACTGAAAAACGCTCAGAGAGTAT 203
||||||||||||| |||||||||||||| ||||||||||||| ||||||||| | ||||
Sbjct 86 CATCTTCGATTCTTCTCCATCTCAGCACGATTGAGATACTGAGAAACGCTCAAATTGTAT 145
Query 204 GCAGATCGTGGCGACGCGTCTGCAAAGACCCATCGATGTGGCGCAAAATCGACATGAGAA 263
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 146 GCAGATCGTGGCGACGCGTCTGCAAAGACCCATCCATGTGGCGCAAAATCGACATGAGAA 205
Query 264 ACAACGGAATATTTGGTTACGACTACGATAGGATGTGTCGTCACGCCGTCGATCTCAGCG 323
|||||||||| |||||||||||||||| | | || ||||||||||| ||||||||||
Sbjct 206 ACAACGGAATCTTTGGTTACGACTACG--A-CA-GT-CCGTCACGCCGTTGATCTCAGCG 260
Query 324 AAGGCGGTTTGGTCGAAATCAACATGGTACACTTCGGCAACGATTCTCTCTACTCCTACA 383
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 AAGGTGGTTTAGTCGAAATCAACATGGTACACTTCGGCAACGATTCTCTCTACTCCTACA 320
Query 384 TTGCTGAAAGATCGAGTAATCTGAGATGCCTTAGACTTGCTATGTGCTATCCACTAACAG 443
| || ||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 321 TCGCCCAAAGATCAAGTAATCTGAGATGCCTTAGGCTTGCAATGTGCTATCCACTAACTG 380
Query 444 GCAAGGGGTTTGTCAGCGCAGTCATGCAGCTCTCATTCCTTGAAGAACTCGAGATTTCAC 503
|||| || |||||||| ||||||||| |||||||||||||||| |||||||| |||||||
Sbjct 381 GCAATGGATTTGTCAGTGCAGTCATGAAGCTCTCATTCCTTGAGGAACTCGATATTTCAC 440
Query 504 ACGGCTATGCACAACTGGATTTGAAAGCTATAGGCCAGTCTTGCACACTACTGAAGACAT 563
| |||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 441 AGGGCTATACACAACTGGATTTGAAAGCTATAGGCCACTCTTGCCCACTACTGAAGACAT 500
Query 564 TCAAGCTAAACCGCCCTTCTTTCAGCCGGTACGTTAAATATGATG 608
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 501 TCAAGCTAAACCGTCCTTCTTTCAGCCGGTTCGTTAAATATGATG 545
> AT4G05500.1 | Symbols: | pseudogene, F-box protein family, AtFBL9/AtFBL23,
contains similarity to N7 protein GI:3273101
from (Medicago truncatula); blastp match of 39% identity and
1.6e-34 P-value to GP|3273101|emb|CAA76808.1||Y17613 N7 protein
{Medicago truncatula} | chr4:2780170-2782675 REVERSE LENGTH=2506
Length=2506
Score = 399 bits (216), Expect = 2e-110
Identities = 311/355 (88%), Gaps = 13/355 (4%)
Strand=Plus/Plus
Query 601 ATATGATGATGAAGCTCTAGCAATTGCTGAAACTATGCCCGGATTACG-CTACCTCGAGC 659
||| ||||||||| ||||||||||||||||||| ||||||| |||||| | ||||| |||
Sbjct 51 ATACGATGATGAACCTCTAGCAATTGCTGAAACCATGCCCGAATTACGAC-ACCTCAAGC 109
Query 660 TTTTTGGGAACGGACTAACCAACTCAGGATTGGAAGCTATTCTGGACAACTGTCTTCACT 719
|||||||||||||||| ||||||| | |||||||||| ||||| ||||||||| ||||||
Sbjct 110 TTTTTGGGAACGGACTGACCAACTTAAGATTGGAAGCCATTCTTGACAACTGTGTTCACT 169
Query 720 TGGAACATCTTGATTTACGCCGCTGCTTCAACATTTACCTTGTCGGGGATCTCGAGAAGC 779
||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 170 TGGTACATCTTGATTTACGCCGCTGCTTCAACATTAACCTTCTCGGGGATCTCGAGAAGC 229
Query 780 GCTGTTCTGAGAGTTTCAGAGATTTGAGACGCCCTGAGGACTCAACTGCTGATTCCCCAT 839
||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 230 GCTGTTCTGAGAGGATCAGAGATTTGAGACGCCCTGATGACTCAACCGCTGATTCCCCTT 289
Query 840 TTGATGCCACTTCCGTTAT-TATTTCAGAAGGAGAAGACAACTA----TTT--CTCAGAT 892
|||||||| |||||| ||| |||| ||| |||||||||| |||| ||| |||||||
Sbjct 290 TTGATGCCTCTTCCGATATATATT-CAGCAGGAGAAGACGACTACGACTTTTACTCAGAT 348
Query 893 GATT-CTGACCTATATAATCCTTATTATGACTAGATA-GGATACGCTGTCTGATC 945
||| | || ||||||| |||||||||||||| ||| || |||| | |||||||
Sbjct 349 GATAGC-GATGTATATAACCCTTATTATGACTAAATAAGGGTACGTTATCTGATC 402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46215415240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5