BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943337
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03610.1 | Symbols: | Metallo-hydrolase/oxidoreductase supe... 944 0.0
> AT4G03610.1 | Symbols: | Metallo-hydrolase/oxidoreductase superfamily
protein | chr4:1605039-1606917 FORWARD LENGTH=912
Length=912
Score = 944 bits (511), Expect = 0.0
Identities = 603/648 (93%), Gaps = 3/648 (0%)
Strand=Plus/Plus
Query 240 ATCATTCTAACTCATGAGCACGCTGACGCGGTTCATGGCTTAGATGATATTCGATCTCTT 299
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 265 ATCATTCTAACTCATGAGCACGCAGATGCGGTTCATGGCTTAGATGAAATTCGATCTCTT 324
Query 300 CAACCTCGTGGTGCAACTA-TG--GACACCTATCCACTTCCTGTGTTTCTATCTCAATTT 356
||||||||||||||||||| || || ||| |||||||||| || |||||||||||||||
Sbjct 325 CAACCTCGTGGTGCAACTATTGTTGATACCGATCCACTTCCCGTCTTTCTATCTCAATTT 384
Query 357 TCAATGGAAAGTATTGCTACAAGGTTTCCTTATTTGGTTGAAAAGAAGGTTAAAGAAGTA 416
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 385 ACAATGGAGAGTATTGCTACAAGGTTTCCTTATTTGGTTGAAAAGAAGGTAAAAGAAGTA 444
Query 417 CCTAGACGGGTTTCGCTGCTTGACTGGACTATCATTGAAGAGAATTGTGACAAACCATTC 476
|||||||| ||||| || |||||||||| | ||| ||||||||||||||| ||||||||
Sbjct 445 CCTAGACGAGTTTCACTTCTTGACTGGAAAAACATCGAAGAGAATTGTGACGAACCATTC 504
Query 477 ACTGCCTCGGGCTTATCTTTCACGCCTCTTCCAGTGATGCATGGAGAGGACTACATTGCT 536
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 505 GCTGCCTCGGGCTTATCTTTCACGCCTCTTCCGGTGATGCATGGAGAGGACTACATTGCT 564
Query 537 TTAGGTTTCCTCTTTGGCGGTAAAAGTAAAGTGGCTTATATATCTGATGTTTCACGCATT 596
|||||||||||||| |||| |||||||||||||||||||||||| || || ||||| |||
Sbjct 565 TTAGGTTTCCTCTTCGGCGATAAAAGTAAAGTGGCTTATATATCAGACGTATCACGGATT 624
Query 597 CCACCGAGTACCGAGTATGCTATTTCCAAAGCCGGGGCTGGACAGTTGGATCTTCTTATC 656
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 625 CCACCGAGTACCGAGTATGCTATTTCCAAAGCTGGGGCTGGACAGTTAGATCTTCTTATC 684
Query 657 CTGGATACAAATATACCGCGGAAGAGAGGACTACATCCCACACACATCTGTTTTCCTGAG 716
|||||||||||||||||| |||||||||||| |||||||||||||||||||||| | |||
Sbjct 685 CTGGATACAAATATACCGTGGAAGAGAGGACCACATCCCACACACATCTGTTTTACAGAG 744
Query 717 GCTCTTGAAATCATAAAGAGGCTCTGCCCAAAGAGAGCGCTTTTAACGGGCATGACACAC 776
|||||||| ||| |||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 745 GCTCTTGAGATCTTAAAGAGGCTATGTCCAAAGAGAGCGCTTTTAACGGGTATGACACAC 804
Query 777 GACTTTGATCACCATGAATACAATGAGATACTAGTGGAATGGTCTCTAAGGGAAGGAATC 836
|| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 805 GAGTTTGATCACCATGAATACAATGAGATACTTGCAGAATGGTCTCTAAGGGAAGGAATC 864
Query 837 CATGTACAGCTTGCTCACGACGGATTACGGCTTCCAATAGACCTATGA 884
||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 865 CATGTACAGCTTGCTCATGACGGATTACGGCTTCCAATAGACCTATGA 912
Score = 318 bits (172), Expect = 5e-86
Identities = 190/199 (95%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 21 ATGGAGAAGAATCAATGTGATGATGATCGAACGGCTTTGATCTTTCTCGGAACAGGCTGC 80
|||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||||
Sbjct 1 ATGGAGAAGAATCAATCTGATGATGATGGAACGGCTCTGATCTTTCTTGGAACAGGCTGC 60
Query 81 TCCGGTGCAGTTCCCGATTTCAGATGCTTACTCCAGCCGTCAGATCCTCCTTGCCATGTT 140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCGGTGCAGTTCCCGATTTCAGATGCTTACTCCAGCCGTCAGATCCTCCTTGCCATGTC 120
Query 141 TGTTCTCAGTCACTCTCTTTACTTCCTCATCTAAACCCTAATTACAGATGCAATACATCG 200
||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 121 TGTTCTCAGTCCCTCTCTTTACTTCCTCACCTTAACCCTAACTACAGATGCAATACATCG 180
Query 201 CTCTTGATTGATTATTGCA 219
|||||||||||||||||||
Sbjct 181 CTCTTGATTGATTATTGCA 199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44155815213
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5