BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943339

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G72580.1 | Symbols:  | unknown protein; Has 3 Blast hits to ...   355    1e-97


> AT1G72580.1 | Symbols:  | unknown protein; Has 3 Blast hits to 
3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 
0 (source: NCBI BLink). | chr1:27334076-27334771 REVERSE LENGTH=624
Length=624

 Score =  355 bits (192),  Expect = 1e-97
 Identities = 280/319 (88%), Gaps = 19/319 (6%)
 Strand=Plus/Plus

Query  26   GGCCTCTTATGAATCACAAAGAGATGTTGTTGAATTGGCGACCCTTGAACAGACGAAAAA  85
            ||| ||||||||||||||||||||||| | ||||||||||||||||||||| || |||||
Sbjct  72   GGCTTCTTATGAATCACAAAGAGATGTCGCTGAATTGGCGACCCTTGAACAAACTAAAAA  131

Query  86   -ACATGTGGAGGAAT-TAGAGGAGGTTCTTAAGAAATTTGAACAAACTTATTTGGAAAAA  143
             | ||||||||| || | ||||||||||| |||||| | ||||||||||||||||   ||
Sbjct  132  GA-ATGTGGAGG-ATGTCGAGGAGGTTCTAAAGAAACTCGAACAAACTTATTTGG-GGAA  188

Query  144  GG-AAAAGCCGCAGATGATACGCTTTTGAGTGATGAAGAAATGGAAAAGTT-AAGTCAGA  201
            || ||||| | |||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct  189  GGAAAAAGTCACAGATGATACGCTTTTGAGTGACGAAGAAATGGAAAAGTTCAA-TCAGA  247

Query  202  TGATGAACGT-TGTGAAAGTTCTGAACAATTGTTCGACAAAGATAGGACAGTCATTGCCG  260
            |||||||| | ||| ||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct  248  TGATGAAC-TGTGTAAAACTTCTGAACAATTGTTTGACAAAGATAGGACAGTCATTGCCG  306

Query  261  CTAAaagaagaagaagaaagagaaTTA----A--TTGAAGTTGATTTGAATAATATACCC  314
            ||||||||||  || ||||||||||||    |  ||||||||||||| || |||||||||
Sbjct  307  CTAAAAGAAG--GA-GAAAGAGAATTAGTTGAAGTTGAAGTTGATTTCAAGAATATACCC  363

Query  315  TAATTAAATGCTGAATCAT  333
            |||||||||| ||||||||
Sbjct  364  TAATTAAATGTTGAATCAT  382



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15733805437


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5