BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943348
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03565.1 | Symbols: | Cystatin/monellin superfamily protein... 459 2e-128
> AT4G03565.1 | Symbols: | Cystatin/monellin superfamily protein
| chr4:1586747-1587734 FORWARD LENGTH=792
Length=792
Score = 459 bits (248), Expect = 2e-128
Identities = 460/557 (83%), Gaps = 35/557 (6%)
Strand=Plus/Plus
Query 182 AGATAGCATAGTGGACGACGGAGATTCAGCAAGCGATCAATCGGAATGGGGAGTGGATAG 241
|||||| ||||||||||| ||| ||||| ||| ||||||| | || |||| ||||||||
Sbjct 258 AGATAGTATAGTGGACGATGGATATTCAACAAACGATCAACCAGAGTGGGAAGTGGATAA 317
Query 242 CTTCGACG----ATA-AG-GAATATAT-TTCACCTGATGAAGACACTCATACCGACGAAG 294
|||||| | ||| || | || | | |||||||||||||||| | ||||||||||||
Sbjct 318 CTTCGATGATTTATATAGCG-ATTTCTGTTCACCTGATGAAGACTGTTATACCGACGAAG 376
Query 295 AAGTTGAGCG-AAAATCCCGTCTTTATAAACGGAATCTCCACTTTAGCCATGTTCGG-TT 352
||| |||||| |||| ||||||||| || |||||||||||||| | | | || ||
Sbjct 377 AAGATGAGCGTAAAA-GACGTCTTTATCGTCGAAATCTCCACTTTAGTC--G-T-GGTTT 431
Query 353 TCTTGTGGAAGAAGGGCTTGGTCCACGTCCACGTCCACGTTCCGTAGGGGGTGGCT-CTA 411
||| |||||| || | || | | || ||||||||||||| || ||| | | |
Sbjct 432 TCTGGTGGAA-AA-AG---GG---A--TTCA--TCCACGTTCCGTATGGATTGG-TGCAA 478
Query 412 -CTTATCTTGGATC-TCTGGACAGTGAACATTCTCCGGTTAAAGGAAGGACACAGCTTCA 469
|||| |||| | | | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 479 TCTTA-CTTGAACCAT-TGGACAGTGAACATTCTCCGGTTAAAGGAAGGACACAACTTCA 536
Query 470 ATACGCACAAGACATGGCCAAATTGTCCCTTCGCAAGTACAATGCCTTTAACGAAACCAA 529
||||||||||||||||| |||||||| |||||||| ||||||||||| || ||||||||
Sbjct 537 ATACGCACAAGACATGGTCAAATTGTGTCTTCGCAAATACAATGCCTTAAAGGAAACCAA 596
Query 530 TGTGAAATTGGATCATGTTGTAAGAGTGACAGGGTGTTTTAGGGGTAGGTTTACTTCGTA 589
||||| ||||||||||||||||||||||||||||| ||| | ||||||| ||||||
Sbjct 597 TGTGACATTGGATCATGTTGTAAGAGTGACAGGGTCTTTCACTGGTAGGTGGGTTTCGTA 656
Query 590 TATCACTTTCATGGCGAAAGAATCTGAGGAGGATGATACGCTTGTGGAGTATCAAGCCAA 649
||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 657 TATTACTTTTATGGCGAAAGAGTCTGAGGACGATGATACGCTTGTGGAGTATCAAGCCAA 716
Query 650 GGTTACCAAGAATATAA-AACGCAAGACTTATCCTATGTTTTGCAGGCCTAGTCCCAAGC 708
|||| ||||| || | || | |||||||||||||||||||||||||||||||| ||||
Sbjct 717 GGTTGTGAAGAA-ATTACAATGTAAGACTTATCCTATGTTTTGCAGGCCTAGTCCTAAGC 775
Query 709 TAGATCTAGATATGTAG 725
|||||| |||| |||||
Sbjct 776 TAGATCCAGATTTGTAG 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36319288281
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5