BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943349
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03565.1 | Symbols: | Cystatin/monellin superfamily protein... 479 2e-134
> AT4G03565.1 | Symbols: | Cystatin/monellin superfamily protein
| chr4:1586747-1587734 FORWARD LENGTH=792
Length=792
Score = 479 bits (259), Expect = 2e-134
Identities = 462/555 (83%), Gaps = 34/555 (6%)
Strand=Plus/Plus
Query 182 AGATAGCATAGTGGACGACGGAGATTCAGCAAGCGATCAATCGGAATGGGGAGTGGATAG 241
|||||| ||||||||||| ||| ||||| ||| ||||||| | || |||| ||||||||
Sbjct 258 AGATAGTATAGTGGACGATGGATATTCAACAAACGATCAACCAGAGTGGGAAGTGGATAA 317
Query 242 CTTCGATG----AT-GAG-GAATAT-TGTTCACCTGATGAAGACTCTCATACCGACGAAG 294
|||||||| || || | || | ||||||||||||||||||| | ||||||||||||
Sbjct 318 CTTCGATGATTTATATAGCG-ATTTCTGTTCACCTGATGAAGACTGTTATACCGACGAAG 376
Query 295 AAGTTGAG-GGAAAAGCCCGTCTTTATAAACGGAATCTCCACTTTAGCCATGGCTTTCTT 353
||| |||| | ||||| ||||||||| || |||||||||||||| | ||| |||||
Sbjct 377 AAGATGAGCGTAAAAG-ACGTCTTTATCGTCGAAATCTCCACTTTAGTCGTGGTTTTCTG 435
Query 354 GTTGAAGAAGGGATTGGTCCACGTCCACGTTCACGTTCCGTAGG-TT-GTGGCTATATCT 411
|| ||| |||||| | | || ||||||||| || | | || || || || | ||||
Sbjct 436 GTGGAAAAAGGGA-T--T-CA--TCCACGTTC-CG-T--AT-GGATTGGT-GC-A-ATCT 481
Query 412 TACTTAAATC-TCTGGACAGTGAACATTCTCCGGCTAAAGGTAGGACACAGCTTCAATAC 470
||||| || | | ||||||||||||||||||||| |||||| |||||||| |||||||||
Sbjct 482 TACTTGAACCAT-TGGACAGTGAACATTCTCCGGTTAAAGGAAGGACACAACTTCAATAC 540
Query 471 GCACAACACATGGCCAAATTGTCTCTTCGCAAGTACAATACCTTAAACGAAACCAATGTG 530
|||||| |||||| |||||||| ||||||||| |||||| ||||||| ||||||||||||
Sbjct 541 GCACAAGACATGGTCAAATTGTGTCTTCGCAAATACAATGCCTTAAAGGAAACCAATGTG 600
Query 531 AAATTGGATCATGTTGTAAGAGTAACAGCGTCTTTTGGC-GTTAGGCAGACTTCGTATAT 589
| ||||||||||||||||||||| |||| ||| ||| | | |||| | |||||||||
Sbjct 601 ACATTGGATCATGTTGTAAGAGTGACAGGGTC-TTTCACTGGTAGGTGGGTTTCGTATAT 659
Query 590 CACTTTCATGGCGAAAGAATCTAAGGGA-GATGATACGCTTGTGGAGTATCAAACCAAGG 648
||||| ||||||||||| ||| | ||| |||||||||||||||||||||||| ||||||
Sbjct 660 TACTTTTATGGCGAAAGAGTCTGA-GGACGATGATACGCTTGTGGAGTATCAAGCCAAGG 718
Query 649 TTGCT-AAAAAATTTCAATGCAAGACTTATCCTATGTTTTGCAGGCCTAGTCCAAAGCTA 707
||| | || ||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 719 TTG-TGAAGAAATTACAATGTAAGACTTATCCTATGTTTTGCAGGCCTAGTCCTAAGCTA 777
Query 708 GATCCAGATATGTAG 722
||||||||| |||||
Sbjct 778 GATCCAGATTTGTAG 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5