BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943356
Length=782
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03510.1 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 | ... 1146 0.0
> AT4G03510.1 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1
| chr4:1557120-1559428 REVERSE LENGTH=1632
Length=1632
Score = 1146 bits (620), Expect = 0.0
Identities = 734/787 (93%), Gaps = 16/787 (2%)
Strand=Plus/Plus
Query 10 GGATTTTGACCA---ATGGCCTTAGATCAATCTCTTGAAGA---TGC-TT-C-T---GTA 57
|||||||||||| |||||||||||||||||| ||||||| ||| || | | | |
Sbjct 176 GGATTTTGACCACTGATGGCCTTAGATCAATCTTTTGAAGATGCTGCTTTACTTGGAGAA 235
Query 58 CTTTATGGAGAAGGTGCATTTTGTTTCAAGAGCAAGAAACCTGAACCCATCT-CTGTCTC 116
|| ||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 236 CTCTATGGAGAAGGTGCATTTTGTTTCAAGAGCAAGAAACCTGAACCCAT-TACAGTCTC 294
Query 117 GGTTTCTTCTGATGACGGC-GATGATTCGAATTTCGACTGCAATATTTGCCTAGACTCAG 175
|||| |||||||||| | |||||||||||||| ||||||||||||||| ||||||| |
Sbjct 295 GGTTCCTTCTGATGA-TACTGATGATTCGAATTTTGACTGCAATATTTGCTTAGACTCGG 353
Query 176 TGCAAGAACCCGTTGTGACTCTCTGTGGTCACCTCTTCTGCTGGCCTTGTATTCACAAAT 235
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 354 TGCAAGAACCTGTTGTGACTCTCTGTGGTCACCTCTTTTGCTGGCCTTGTATTCACAAAT 413
Query 236 GGCTTGATGTACAGAGTTTTTCAACAAGTGATGAATACCAAAGACATAGACAGTGTCCCG 295
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 414 GGCTTGATGTACAGAGCTTCTCAACAAGTGATGAATACCAAAGACATAGACAGTGTCCTG 473
Query 296 TTTGTAAATCTAAAGTGTCTCATTCTACATTGGTTCCTTTGTATGGCAGAGGCCGTTGTA 355
|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 474 TTTGTAAATCTAAAGTTTCTCATTCTACTTTGGTTCCTTTGTATGGTAGAGGCCGTTGTA 533
Query 356 CTACTCAGGAAGAAGGTAAAAACAGTGTGCCTAAAAGACCTGTAGGACCGGTTTACCGGT 415
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 534 CTACTCAGGAGGAAGGTAAAAACAGTGTGCCTAAAAGACCCGTAGGACCGGTTTATCGGC 593
Query 416 TTGAAATGCCGAATTCACCTTATTCCAGTACGGATCTGCGGTTATCACAACGGGTTCATT 475
||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 594 TTGAAATGCCGAATTCACCTTATGCAAGTACTGATCTGCGGTTATCACAACGGGTTCATT 653
Query 476 TCAATAGCCCACAGGAAGGTTACTACCCTGTCTCAGGGGTGATGAGTTCAAACAGTTTAT 535
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 654 TCAATAGCCCACAGGAAGGTTACTACCCTGTCTCAGGGGTGATGAGCTCGAACAGTTTAT 713
Query 536 CATACTCTGCTGTTTTGGATCCTGTGATGGTGATGGTTGGAGAAATGGTAGCTACGAGAT 595
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 714 CATACTCTGCTGTTTTGGATCCGGTGATGGTGATGGTTGGAGAAATGGTAGCTACGAGGT 773
Query 596 TGTTTGGAACACGAGTGATGGATAGGTTTGCATATCCGGACACTTACAATCTCGCAGGGA 655
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 774 TGTTTGGAACACGAGTGATGGATAGATTTGCGTATCCGGACACTTACAATCTCGCAGGGA 833
Query 656 CAAGCGGGCCGAGGATGAGATGGCGGATAATGCAGGCAGATAAATCGCTGGGAAGAAtct 715
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 834 CTAGCGGGCCGAGGATGAGAAGGCGGATAATGCAGGCAGATAAATCGCTGGGAAGAATCT 893
Query 716 tcttcttcttcatgtgttgtgttgttctgtgtcttcttttgttttaagttctCATAGCTA 775
|||||||||| |||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 894 TCTTCTTCTTTATGTGTTGTGTTGTTCTGTGTCTTCTCTTGTTTTAGGTTTTCATAGCTA 953
Query 776 GCTTGGT 782
|||||||
Sbjct 954 GCTTGGT 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38027249279
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5