BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943358
Length=559
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03490.2 | Symbols: | Ankyrin repeat family protein | chr4:... 270 9e-72
AT4G03500.1 | Symbols: | Ankyrin repeat family protein | chr4:... 106 3e-22
AT4G03460.1 | Symbols: | Ankyrin repeat family protein | chr4:... 87.9 9e-17
> AT4G03490.2 | Symbols: | Ankyrin repeat family protein | chr4:1549176-1552784
REVERSE LENGTH=2272
Length=2272
Score = 270 bits (146), Expect = 9e-72
Identities = 265/318 (83%), Gaps = 25/318 (8%)
Strand=Plus/Minus
Query 47 CTCTCAAAAGACGT--TGGGTTTGGGATTTTGTTCGGCGATATCCAGAGCTCTCAAGCCG 104
||||||||||| || |||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct 2003 CTCTCAAAAGATGTAGTGGGGTTGGGATTTAGTTCGGCGATATCCAGAGCTGTCAAGCCG 1944
Query 105 CTATTATTTTGCTGTCTAGCCACACCAAAAAACTGGCACCCTAAAGTTGTGAGTATGTTT 164
||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 1943 CTATTATTTTGCTGTCTAGCCAC-C-AAAA--CTGGCACCCTAAAGTTGTGAGTATGTTT 1888
Query 165 ACTTGGGACCAT-A--GAGGTGACCTGAAAAT-AGATTCCA-ATGGCTCTGTTCCCAACT 219
||||||||||| | ||||||||| || || | || | | || | | | ||
Sbjct 1887 TCTTGGGACCATCATAGAGGTGACCCCAATATTACCTTGTATACAGCGAT-TG---A-CT 1833
Query 220 TGGGAATGGCCACTTTGGCTAAGAAAACAGATTTCCGAGTCTTTCTTGTATGTGACACAT 279
||| | |||| |||| | | | | | ||||| | |||||||||||||||||| ||
Sbjct 1832 TGG-A-TGGC---TTTGA-TCA-ATGA--GCTTTCCAATTCTTTCTTGTATGTGACATAT 1782
Query 280 TGGCCATGTACTCCTCTATCATAACAATAGTATCTTTCTCTCAACTCAAAAGCCTTCAAC 339
|||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1781 TGGCGATGTATTCCTCTATCATGACAATAGTATCTTTCTCTCAACTCAAAAGCCTTCAAC 1722
Query 340 ATCGCACTTCCAGTTCTT 357
||||||||||||||||||
Sbjct 1721 ATCGCACTTCCAGTTCTT 1704
> AT4G03500.1 | Symbols: | Ankyrin repeat family protein | chr4:1553092-1556571
FORWARD LENGTH=2320
Length=2320
Score = 106 bits (57), Expect = 3e-22
Identities = 69/74 (93%), Gaps = 3/74 (4%)
Strand=Plus/Plus
Query 119 TCTAGCCACACCAAAAAACTGGCACCCTAAAGTTGTGAGTATGTTTACTTGGGACCATAG 178
||||| | |||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1537 TCTAG-C-CACC-ATAAACTGGCACCCTAAAGTTGTGAGTATGTTTACTTGGGACCATAG 1593
Query 179 AGGTGACCTGAAAA 192
|| |||||||||||
Sbjct 1594 AGTTGACCTGAAAA 1607
> AT4G03460.1 | Symbols: | Ankyrin repeat family protein | chr4:1536404-1540111
REVERSE LENGTH=2034
Length=2034
Score = 87.9 bits (47), Expect = 9e-17
Identities = 60/66 (91%), Gaps = 1/66 (2%)
Strand=Plus/Plus
Query 127 CACCAAAAAACTGGCACCCTAAAGTTGTGAGTATGTTTACTTGGGACCATAGAGGTGACC 186
|||| |||||||||||||||||||||||||||||| | ||||||||| | |||| |||||
Sbjct 1290 CACC-AAAAACTGGCACCCTAAAGTTGTGAGTATGCTCACTTGGGACAACAGAGTTGACC 1348
Query 187 TGAAAA 192
||||||
Sbjct 1349 TGAAAA 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26825034498
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5