BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943368
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03420.1 | Symbols: | Protein of unknown function (DUF789) ... 1580 0.0
AT1G03610.1 | Symbols: | Protein of unknown function (DUF789) ... 850 0.0
> AT4G03420.1 | Symbols: | Protein of unknown function (DUF789)
| chr4:1511839-1514030 FORWARD LENGTH=1756
Length=1756
Score = 1580 bits (855), Expect = 0.0
Identities = 907/933 (97%), Gaps = 0/933 (0%)
Strand=Plus/Plus
Query 51 TCAAACCTTGACAGATTCCTTCATTGCACAACACCTGTAGTGCCACCCCAATCTCTCCCC 110
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 406 TCAAACCTTGACAGATTCCTTCATTGCACAACACCTGTAGTGCCACCCCAATCTCTATCC 465
Query 111 AAGGCGGAGATTAGGAGTTTGAATCGGATTTGGCATCCATGGGAGAGAGAAAAGGTTGAG 170
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 466 AAGGCGGAGATTAGGAGTTTGAATAGGATTTGGCATCCATGGGAGAGACAAAAGGTTGAG 525
Query 171 TTTTTCAGATTGAGTGATCTATGGGATTGTTACGATGAATGGAGTGCTTATGGAGCTGGT 230
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 526 TTTTTCAGATTGAGTGATCTATGGGATTGTTATGATGAATGGAGTGCTTATGGAGCTGGT 585
Query 231 GTTCCTATTCGTCTCACTAATGGAGAATCTCTTGTTCAATATTATGTTCCTTATCTCTCT 290
||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 586 GTTCCAATTCGTCTCTCTAATGGAGAATCTCTTGTTCAATATTATGTTCCCTATCTCTCT 645
Query 291 GCTATTCAGATTTTCACCTCTCGTTCTTCCTTGATCCGCTTTAGGGATGACTCTGAAGAT 350
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 646 GCTATTCAGATTTTCACCTCTCGTTCTTCCTTGATCCGCTTAAGGGATGATTCTGAAGAT 705
Query 351 GGGGAAAGCAGAGATTCCTTTAGTGATTCATATAGTGATGAGAGTGAAAGTGATAAACTT 410
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GGGGAAAGCAGAGATTCGTTTAGTGATTCATATAGTGATGAGAGTGAAAGTGATAAACTT 765
Query 411 TCGAGATGTGCTTCTGAGGAAGGACTTGAACATGACGCTCTCTTGCATCCGAATGATCGC 470
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 766 TCGAGATGTGCTTCTGATGAAGGACTTGAACATGACGCTCTCTTGCATCCTAATGATCGG 825
Query 471 TTGGGATATCTTTATCTGCAATACTTTGAGAGATCAGCTCCTTATGCTCGAGTTCCTCTC 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TTGGGATATCTTTATCTGCAATACTTTGAGAGATCAGCTCCTTATGCTCGAGTTCCTCTC 885
Query 531 ATGGATAAGATCAATGAATTGGCTCAAAGGTACCCTGGATTAATGTCGTTGAGAAGCGTA 590
||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 886 ATGGATAAGATCAATGAATTGGCTCAAAGGTACCCGGGACTAATGTCGTTGCGAAGCGTA 945
Query 591 GATCTTTCCCCGGCAAGTTGGATGGCGGTAGCGTGGTACCCAATTTACCATATTCCAATG 650
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 946 GATCTTTCCCCGGCAAGTTGGATGGCGGTAGCGTGGTACCCTATTTACCATATTCCAATG 1005
Query 651 GGAAGGACCATCAAAGATTTGTCCACTTGTTTCCTTAGTTATCACACTCTTTCATCTTCT 710
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1006 GGAAGGACCATCAAAGATTTGTCCACTTGTTTCCTCACTTATCACACTCTTTCATCTTCT 1065
Query 711 TTCCAAGATATGGAGCCAGAAGAAAATGGCGGGGAAAAGGAGAGGATCCGGAAGGAAGGA 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TTCCAAGATATGGAGCCAGAAGAAAATGGCGGGGAAAAGGAGAGGATCCGGAAGGAAGGA 1125
Query 771 GAAGGTGTAACTTTGCTTCCTTTTGGATTAGCCACTTACAAGATGCAAGGCAATGTTTGG 830
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1126 GAAGGTGTAACTTTGCTTCCTTTTGGGTTAGCCACTTATAAGATGCAAGGCAATGTTTGG 1185
Query 831 CTCTCGGAAGACGATCAAGGTCAAGATCAAGAGCGAGTACTGTCGCTTCTAAGTGTTGCG 890
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1186 CTCTCGGAAGACGATCAAGGTCAAGATCAAGAGCGAGTTCTTTCGCTTCTAAGTGTTGCG 1245
Query 891 GATTCTTGGCTAAAACAGCTAAGAGTCCAACACCATGACTTCAACTACTTCTCAAGAATG 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 GATTCTTGGCTAAAACAGCTAAGAGTCCAACACCATGACTTCAACTACTTCTCAAGAATG 1305
Query 951 GCTCACCGTGGCTAAAACAAATCCGTCGCTATA 983
||||||||||||| |||||||||||| ||||||
Sbjct 1306 GCTCACCGTGGCTGAAACAAATCCGTTGCTATA 1338
> AT1G03610.1 | Symbols: | Protein of unknown function (DUF789)
| chr1:900887-903003 FORWARD LENGTH=1675
Length=1675
Score = 850 bits (460), Expect = 0.0
Identities = 809/969 (83%), Gaps = 58/969 (6%)
Strand=Plus/Plus
Query 18 ATCATGGTGTTTG-GAAATGGGTCAACGC-AAAAATCAAACCTTGA-CAGATTCCTTCAT 74
||||||||| || ||| |||||||| | ||||||| || ||||| | |||||||||||
Sbjct 415 ATCATGGTGAATGTTAAA-GGGTCAAC-CAAAAAATCGAATCTTGATC-GATTCCTTCAT 471
Query 75 TGCACAACA-CCTGTAGTGCCACCCCAATCTCTCCCCAAGGCGGAGATTAGGAGTTTGAA 133
|||| |||| ||| |||||||||||||||||||||||||| |||||||||| | | ||
Sbjct 472 TGCATAACACCCT-TAGTGCCACCCCAATCTCTCCCCAAGACGGAGATTAGAACCCTAAA 530
Query 134 TCGGATT-TGGCATCCATGGGAGAGAGAAAAGGTTGAGTTTTTCAGATTGAGTGATCTAT 192
|| |||| |||||||||||||||||| ||||||||||||||||||| ||||||||| | |
Sbjct 531 TC-GATTGTGGCATCCATGGGAGAGACAAAAGGTTGAGTTTTTCAGGTTGAGTGATTTGT 589
Query 193 GGGATTGTTACGATGAATGGAGTGCTTATGGAGCTGGTGTTCCTATTCGTCTCACTAATG 252
|||||||||| ||||||||||| |||||||||||| | |||||||||| | | || || |
Sbjct 590 GGGATTGTTATGATGAATGGAGCGCTTATGGAGCTAGCGTTCCTATTCATGTTACCAACG 649
Query 253 GAGAATCTCTTGTTCAATATTATGTTCCTTATCTCTCTGCTATTCAGATTTTCACCTCTC 312
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 650 GAGAATCTCTTGTTCAATACTATGTTCCTTATCTCTCTGCCATCCAGATTTTCACCTCTC 709
Query 313 GTTCTTCCTTGATCCGCTTTAGGGATGACTCTGAAGATGGGGAAAGCAGAGATTCCTTTA 372
||| |||||||||||||| ||||| || ||||||||||||||| | ||| ||
Sbjct 710 ATTCCTCCTTGATCCGCTTAAGGGAAGAGTCTGAAGATGGGGAATG-TGAG-----GGTA 763
Query 373 GTGATTCATATAGTGA-TGAGAGTGAAAGTGATAAACTTTCGAGATGTGCTTCTGAGGAA 431
| ||| | | ||| || | || || || ||| | ||| ||| | |||||||||
Sbjct 764 GAGATCCGTTTAGCGATTCAG-GT---AGCGAT-GA-----GAG-TGT-C-TCTGAGGAA 810
Query 432 GGACTT--GAACATGACGCTCTCTTGCATCCGAA-TGATCGCTTGGGATATCTTTATCTG 488
|||||| ||||| || | ||||||||||| || |||||| ||||| |||||||||||
Sbjct 811 GGACTTGAGAACA--ACACGCTCTTGCATCC-AAGTGATCGTTTGGGTTATCTTTATCTC 867
Query 489 CAATACTTTGAGAGATCAGCTCCTTATGCTC-GAGTTCCTCTCATGGATAAGATCAATGA 547
||||||||||||||||||||||||||| | | |||||||||| |||||||||||||||||
Sbjct 868 CAATACTTTGAGAGATCAGCTCCTTATAC-CAGAGTTCCTCTGATGGATAAGATCAATGA 926
Query 548 ATTGGCTCAAAGGTACCCTGGATTAATGTCGTTGAGAAGCGTAGATCTTTCCCCGGCAAG 607
|||||||||||| ||||| ||||| ||||||||||||||||| |||||||| || || ||
Sbjct 927 ATTGGCTCAAAGATACCCGGGATTGATGTCGTTGAGAAGCGTTGATCTTTCTCCAGCTAG 986
Query 608 TTGGATGGCGGTAGCGTGGTACCCAATTTACCATATTCCAATGGGAAGGACCATCAAAGA 667
||||||| | ||||| |||||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct 987 TTGGATGTCAGTAGCATGGTACCCGATTTACCATATACCAATGGGAAGAACCATTAAAGA 1046
Query 668 TTTGTCCACTTGTTTCCTTAGTTATCACACTCTTTCATCTTCTTTCCAAGATATGGAGCC 727
|| ||||| |||||||| | ||||||||||||||| |||||||| ||||||||||| ||
Sbjct 1047 CTTATCCACGTGTTTCCTCACTTATCACACTCTTTCCTCTTCTTTTCAAGATATGGAACC 1106
Query 728 AGAAGAAAATGGCGGGGAAAAGGAGAG-GATCCGGAAGGAAGGAGAAGGTGTAACTTTGC 786
||||||||||| ||||| |||||||| | | |||| |||||| |||| | ||||| |||
Sbjct 1107 GGAAGAAAATGGTGGGGACAAGGAGAGAG-TGCGGAGGGAAGGGGAAGATATAACTCTGC 1165
Query 787 TTCCTTTTGG-ATTAGCCACTTACAAGATGCAAGGCAATGTTTGGCTCTCGGAAGACGAT 845
| || ||||| || || |||||||||||||||||| |||||||||| ||| | ||| |
Sbjct 1166 TCCCATTTGGGATG-GCTACTTACAAGATGCAAGGCGATGTTTGGCTTTCGCAGGACCA- 1223
Query 846 CAAGGTCAAGATCAAGAGCGAGTA-CTGTCGCTTCTA-AGTGTTGCGGATTCTTGGCTAA 903
| | | ||||||||| || | || |||||| || |||||||||||||||||||| |
Sbjct 1224 CGA--T---GATCAAGAGAGATTGGCT-TCGCTT-TACAGTGTTGCGGATTCTTGGCTTA 1276
Query 904 AACAGCTAAGAGTCCAACACCATGACTTCAACTACTTCT-CAA---G--AATGGCTCACC 957
||||||| || |||||||| ||||||||||||||||||| ||| | |||| |||| |
Sbjct 1277 AACAGCTCAGGGTCCAACATCATGACTTCAACTACTTCTGCAATATGTCAATGACTCATC 1336
Query 958 GTGGCTAAA 966
|||||||||
Sbjct 1337 GTGGCTAAA 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48224781120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5