BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943386
Length=508
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03290.1 | Symbols: | EF hand calcium-binding protein famil... 804 0.0
AT1G05990.1 | Symbols: RHS1 | EF hand calcium-binding protein f... 388 2e-107
> AT4G03290.1 | Symbols: | EF hand calcium-binding protein family
| chr4:1442634-1443499 FORWARD LENGTH=866
Length=866
Score = 804 bits (435), Expect = 0.0
Identities = 485/509 (95%), Gaps = 3/509 (1%)
Strand=Plus/Plus
Query 1 AAAA-CCCTCAATTT-TAAAAACAAATGGATTCCACGGAGCTAAAACGTGTGTTCCAAAT 58
|||| |||| ||||| | |||||||||||||||||||||||| || ||||||||||||||
Sbjct 155 AAAAGCCCTAAATTTATTAAAACAAATGGATTCCACGGAGCTGAACCGTGTGTTCCAAAT 214
Query 59 GTTCGACAAGGACGGAGACGGTAGGATCACTACAAAGGAGCTGAACGAGTCATTAAAGAA 118
||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||
Sbjct 215 GTTCGACAAGGACGGAGACGGGAAGATCACTACGAAGGAGCTGAACGAGTCATTCAAGAA 274
Query 119 CCTGGGTATCATAATCCCCGAAAACGAGCTAACGCAAATTATCCAAAAGATCGATGTTAA 178
||| ||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 275 CCTCGGTATCATAATACCCGAAGACGAACTAACACAAATTATCCAAAAGATCGATGTTAA 334
Query 179 TGGTGACGGTTGTGTTGACATTGAAGAGTTTGGAGAGCTTTACAAGACGATAATGGTTGA 238
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 335 TGGTGACGGTTGTGTTGACATTGAAGAGTTTGGAGAGCTCTACAAGACGATAATGGTAGA 394
Query 239 AGATGAGGACGAGGTAGGAGAAGAAGATATGAAGGAAGCGTTCAACGTATTTGATCGGAA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 AGATGAGGACGAGGTAGGAGAAGAAGATATGAAGGAAGCGTTCAACGTATTTGATCGGAA 454
Query 299 CGGAGATGGGTTTATAACGGTGGATGAATTGAAAGCGGTTTTATCTTCCTTGGGACTCAA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 CGGAGATGGGTTTATAACGGTGGATGAATTGAAAGCGGTTTTATCTTCCTTGGGACTCAA 514
Query 359 GCAAGGTAAGACCTTGGAGGAATGTAGGAAAATGATAATACAAGTGGATGTTGATGGTGA 418
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 515 GCAAGGTAAGACCTTGGAGGAATGTAGGAAGATGATAATGCAAGTGGATGTTGATGGTGA 574
Query 419 TGGTAGGGTTGATTACAAGGAGTTTAGACAAATGATGAAAAAGGGTCGGTTTTTTAGCTC 478
|||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 575 TGGTAGGGTTAATTACATGGAGTTTAGACAAATGATGAAAAAGGGTCGCTTTTTTAGCTC 634
Query 479 TTTGAGCTGATTATAACttttttt-ttCT 506
||||||||||| |||||||||||| ||||
Sbjct 635 TTTGAGCTGATAATAACTTTTTTTCTTCT 663
> AT1G05990.1 | Symbols: RHS1 | EF hand calcium-binding protein
family | chr1:1818447-1819040 FORWARD LENGTH=594
Length=594
Score = 388 bits (210), Expect = 2e-107
Identities = 392/477 (82%), Gaps = 23/477 (5%)
Strand=Plus/Plus
Query 3 AACCCT-CAATTTTAAAAACAAATGGATTCC-ACGGAGCTAAAACGTGTGTTCCAAATGT 60
||| || ||| ||| |||| | ||||| ||| || ||||||||||| |||||||||||||
Sbjct 121 AACACTACAACTTT-AAAAGAGATGGA-TCCGACAGAGCTAAAACGCGTGTTCCAAATGT 178
Query 61 TCGACAAGGACGGAGACGGTAGGATCAC-TACAAAGGAGCTGAACGAGTCATTAAAGAA- 118
|||||||| |||| ||||| | |||||| ||| ||||||| |||| || | | |||
Sbjct 179 TCGACAAGAACGGGGACGGGACGATCACGGGGAAA-GAGCTGAGCGAGACACT-ACGAAG 236
Query 119 CCT-GGGTATCATA-ATCCCCGAAAACGAGCTAACGCAAATTATCCAAAAGATCGATGTT 176
||| ||| || || ||||| || || ||| | || ||||| ||| | |||||||| ||
Sbjct 237 CCTAGGG-AT-TTACATCCCGGACAAGGAGTTGACTCAAATGATCGAGAAGATCGACGTG 294
Query 177 AATGGTGACGGTTGTGTTGACATTGAAGAGTTTGGAGAGCTTTACAAGACGATAATGGTT 236
|||||||| || || || ||||| || |||||||| ||||| |||||||||||||| |
Sbjct 295 AATGGTGATGGGTGCGTGGACATAGACGAGTTTGGTGAGCTATACAAGACGATAAT-G-- 351
Query 237 GAAGATGAGGACGAGGTAGGAGAAGAAGATATGAAGGAAGCGTTCAACGTATTTGATCGG 296
|| || || ||||| || |||||| || ||||| ||||| ||||| || ||||||| |
Sbjct 352 GACGAGGAAGACGA---AGAAGAAGAGGACATGAAAGAAGCTTTCAATGTGTTTGATCAG 408
Query 297 AACGGAGATGGGTTTATAACGGTGGATGAATTGAAAGCGGTTTTATCTTCCTTGGGACTC 356
|| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 409 AATGGAGATGGGTTTATAACGGTGGATGAATTGAAGGCGGTTTTGTCTTCCTTGGGGCTC 468
Query 357 AAGCAAGGTAAGACCTTGGAGGAATGTAGGAAAATGATAATACAA-GTGGATGTTGATGG 415
|| ||||||||||||||||| || |||| ||| ||||||| | || ||||||||||||||
Sbjct 469 AAACAAGGTAAGACCTTGGACGATTGTAAGAAGATGATAA-AGAAAGTGGATGTTGATGG 527
Query 416 TGATGGTAGGGTTGATTACAAGGAGTTTAGACAAATGATGAAAAAG-GGTCGGTTTT 471
||||||||||||| | ||||| ||||||||||||||||||||| | ||| ||||||
Sbjct 528 TGATGGTAGGGTTAACTACAAAGAGTTTAGACAAATGATGAAAG-GCGGT-GGTTTT 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24263093001
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5