BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943390
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03250.1 | Symbols: | Homeodomain-like superfamily protein ... 2187 0.0
> AT4G03250.1 | Symbols: | Homeodomain-like superfamily protein
| chr4:1424902-1427744 FORWARD LENGTH=1672
Length=1672
Score = 2187 bits (1184), Expect = 0.0
Identities = 1369/1455 (94%), Gaps = 25/1455 (2%)
Strand=Plus/Plus
Query 1 TTAAGACTCCTATACAAGTTATGGCGCTTGAGAATTTCTACAATGAGCACAAGTATCCGA 60
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 222 TTAAGACTCCTATGCAAGTTATGGCGCTTGAGAATTTCTACAATGAGCATAAGTATCCGA 281
Query 61 CCGAAGATATGAAGGGTAAGTTAGCAGAGGAAATAGGATTAACCGAGAAGCAAGTTTCAG 120
| ||||| |||||||| ||||||||||||||| | |||||||| ||||||||||||||||
Sbjct 282 CTGAAGAAATGAAGGGCAAGTTAGCAGAGGAAGTTGGATTAACTGAGAAGCAAGTTTCAG 341
Query 121 GTTGGTTCTGCCATAGAAGGTTAAAAGACAAACGTCATGTAAAAGAAGATGGGAACGCCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 342 GTTGGTTCTGCCATAGAAGGTTAAAAGACAAACGTCATGTAAAAGAAGATGGGAATGCCA 401
Query 181 TCGGGAGCCAAGATCGGTCAAGTGTTGTTCTTCAGGATCGTGGAAGCGGGCTTCGACAGG 240
| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 402 TTGGGAGCCAAGATCGGTCAAGCGTTGTTCTTCAGGATCGTGGAAGTGGGCTTCGACAGG 461
Query 241 ATTCATGTGGTAGCACAAAGCAAACGGATTATTGGAACCCCAAGCCTAGGGAAGTTGAAA 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 ATTCATGTGGTAGTACAAAGCAAACGGATTATTGGAACCCCAAGCCTAGGGAAGTTGAAA 521
Query 301 GTCAAAGGCTTTATGGGGGCTCTTATATGGGAAATGCTGATGGTGAAGATAGTACATCTT 360
||| || | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 522 GTC-AA------A----GGCT-TTATATGGGAAATGCTGATGGTGAAGATAGTACATCTT 569
Query 361 CTGACCGTAGCTCATCATTACATAAGAATCTTGTCTCTAGCAAAGATGGAATCCGCGATG 420
|||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 570 CTGATCGTAGCTCATCATTACGTAAGAATCTTGTCTCTAGCAAAGATGGAATTCGCGATG 629
Query 421 TGGAAAGTTCTAGATATGTTGCACATAAAGACGTTATCCAGCATCCTCAGGTCATGAGAA 480
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 630 TGGAAAGTTCTAGATATGTTGCACATAAAGACGTTATTCAGCATCCTCAGTTCATGAGAA 689
Query 481 GCTATGGGTATAATAAGCCTTCGGGATACTTGAAAGTGAAGGGAGAGAGTGAGAATTTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 GCTATGGGTATAATAAGCCTTCGGGATACTTGAAAGTGAAGGGAGAGAGTGAGAATTTTG 749
Query 541 CTATCACTGCCGTAAAGAGACAATTAGGAAGACAATACCAAGAGGATGGTCCACCTCTAG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 750 CTATCACTGCCGTAAAGAGACAATTAGGAAGACAATACCAAGAGGATGGTCCACCTCTGG 809
Query 601 GGGTTGAATTTGATCCTCTTCCTCCTGGTGCATTTGAGCCTCAGACTAATGCTATAGTTC 660
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 810 GGGTTGAATTTGATCCTCTTCCTCCCGGTGCATTTGAGCCTCAGACTAATCCTATAGTTC 869
Query 661 AAGAGCCAATCTATATTGGGAATCAAAGACGGTCTCACCCTCCACATTTACTTGGAACTA 720
| |||||||| ||| |||||||||| |||||| |||||| |||||||||||||||||| |
Sbjct 870 ACGAGCCAATATATGTTGGGAATCAGAGACGGCCTCACCTTCCACATTTACTTGGAACGA 929
Query 721 GGAAGAGCTTTAATCCTGGTCCTAGCTATGAATTAGCTCGTAAATCAAAGATGCATTCGC 780
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 930 GGAAGAGCTTTAATCCTGGTCCTAGCTATGAATTAGCTCGTAAATCAAAGTTGCATTCGC 989
Query 781 CAGATCCAGATTCAGAGgatgatgatg-atgatgatgatgaCAACATAATGGTTGGAATG 839
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 990 CAGATCCAGATTCAGAGGATGATGA-GCATGATGATGATGACAACATAATGGTTGGAATG 1048
Query 840 GAGCCTGGTCTAAGAGATAA-AAAGAGTCTTGGGGAACCAAGACTGAAATCCCCTTCTCC 898
|||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| |
Sbjct 1049 GAGCCTGGTCTAAGAGATAAGAAA-AGTTTTGGGGAACCAAGACTGAAATCCCCTTCTAC 1107
Query 899 CAGTTTCTATAATTCTGTCCCTCACCACAAATCGTTTAAAGAGACATTAAAAGGTTCACC 958
|||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||
Sbjct 1108 CAGTTTCTATAATTCTGTACCTCGCCACAAATCGTTTAAAGAGACATTCAAAGGTTCACC 1167
Query 959 AAGAGAAATCCCTGTAACTAACAGCAAGAATGGTCGGATAAGCTCCAAAAGTTGGGCTGA 1018
| | |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct 1168 ACGGGAAATCCCTGTAACTAACAGCAAGAAGGGTTGGATAAGTTCCAAAAGTTGGGCTGA 1227
Query 1019 AGGTTCGAGAAACAATATGATTGCCAACTTCCATAATCTTTCTGGGAGCAACATTGAAAC 1078
||| ||||||||| || || |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct 1228 AGGGTCGAGAAACCATCTGGTTGCCAACGTCCAAAATCTTTCTGGAAGCAATATTGAAAC 1287
Query 1079 CAATCAGTCTCATGATTATGATAA-ACATATAT-TAAATGGCGGACGCAAGACCGGATAT 1136
|||||||||||||||||||||||| | |||||| ||| ||||||||||||||| ||||||
Sbjct 1288 CAATCAGTCTCATGATTATGATAATA-ATATATCTAA-TGGCGGACGCAAGACGGGATAT 1345
Query 1137 CTCACTAAATCTTCGAAGCTGTTGCCTCCGAGTAGAAGCCGATCCCCTGACTCAATGGAT 1196
||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 1346 CTCACTAAATCTTCGAAGCTGTTACCTCCGAGTAGAAGCAGATCCCCTGAGTCAATGGAT 1405
Query 1197 AGAGGTCCATCTTCTGGGATGGCGGGAA-AGTATCACGGAGAGAGGAATCAAATGAAAAC 1255
||||||||||||||||||||||| |||| | |||||||| |||||||||||||||||||
Sbjct 1406 AGAGGTCCATCTTCTGGGATGGCAGGAATA-TATCACGGGGAGAGGAATCAAATGAAAAT 1464
Query 1256 GCATAGAGAGAAATTGCATTCGACTGATGAACCACCGGTTGCCAAACGAGTGAAACATGG 1315
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 GCAGAGAGAGAAATTGCATTCGACTGATGAACCACCGGTTGCCAAACGAGTGAAACATGG 1524
Query 1316 GTATATTCAGCAAGTTTATGCACCAAAATCATCAT-A--CAGCGAGATTCTTGAACGAAA 1372
||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1525 GTATATTCAGCAAGTATATGCACCAAAATCATCATCATACAGCGAGATTCTTGAACGAAA 1584
Query 1373 AAGCCAGATAAATCGGTCTGGTGTGGAATTGCCCACTAGTTTAAGCGGGGACGATGAGAC 1432
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1585 AAGCCAGATAAATCGGTCTGGTGTGGAACTGCCTTCTAGTTTAAGCGGGGACGATGAGAC 1644
Query 1433 AGACGAAACTAGCTC 1447
|||||| |||||||
Sbjct 1645 TGACGAATCTAGCTC 1659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73142194065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5