BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943395
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03475.1 | Symbols: LIN2, HEMF1, ATCPO-I | Coproporphyrinoge... 961 0.0
AT4G03205.2 | Symbols: hemf2 | Coproporphyrinogen III oxidase |... 645 0.0
> AT1G03475.1 | Symbols: LIN2, HEMF1, ATCPO-I | Coproporphyrinogen
III oxidase | chr1:869051-871211 REVERSE LENGTH=1448
Length=1448
Score = 961 bits (520), Expect = 0.0
Identities = 778/903 (86%), Gaps = 16/903 (2%)
Strand=Plus/Plus
Query 231 GCTGCTCAGGATAAAGTCTGTGAAGCCATTGAAGC-AGTTGAAGGAGGTCCTAAATTCAA 289
|||||||| || | || ||||| || |||||||| | | ||||| |||||||| || ||
Sbjct 304 GCTGCTCAAGACAGTGTTTGTGATGCAATTGAAGCTA-TAGAAGGCGGTCCTAAGTTTAA 362
Query 290 GGAAGATGTTTGGTCCCGACCCGGTGGAGGCGGCGGAATCAGCCGTGTTTTGCAAGATGG 349
|||||||||||||| ||||| ||||| ||||| |||||||| ||||| ||||| || ||
Sbjct 363 AGAAGATGTTTGGTCTCGACCTGGTGGTGGCGGTGGAATCAGTCGTGTGTTGCAGGACGG 422
Query 350 AAATGTATGGGAGAAAGCTGGAGTTAATGTCTCTGTGGTTTATGGTGTTATGCCTCCTGA 409
||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 423 GAATGTCTTTGAGAAAGCTGGTGTTAATGTCTCTGTGGTTTATGGTGTTATGCCTCCTGA 482
Query 410 AGCTTATAGAGCTGCTAAAGCTGC-CA-CGGCTGAGCAAAAACCTGGCCCGGTTCCGTTT 467
||||||||||||||| |||| || || | |||| || |||||||| || ||||||||
Sbjct 483 AGCTTATAGAGCTGC-AAAGG-GCTCAGCTTCTGATCAGAAACCTGGTCCTGTTCCGTTC 540
Query 468 TTTGCCGCCGGTATT-AGCTCGGTTTTGCATCCTAAGAACCCTTTTGCTCCGACTCTGCA 526
|| || || || | | ||||||||||||||||| |||||||||||||| || || |||||
Sbjct 541 TTCGCTGCTGG-AGTCAGCTCGGTTTTGCATCCCAAGAACCCTTTTGCCCCAACCCTGCA 599
Query 527 TTTCAATTACCGTTACTTCGAGACCGATGCTCCAAAGGATGTCCCTGGAGCTCCAAGGCA 586
||||||||| || || |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 600 TTTCAATTATCGCTATTTCGAGACAGATGCTCCAAAGGATGTTCCTGGAGCTCCAAGGCA 659
Query 587 ATGGTGGTTCGGTGGTGGGACTGATTTCACACCTGCTTACATCTTCGAAGAGGACGTCAA 646
||||||||| |||||||| ||||||||||| |||||||||||||| ||||| || |||||
Sbjct 660 ATGGTGGTTTGGTGGTGGCACTGATTTCACTCCTGCTTACATCTTTGAAGAAGATGTCAA 719
Query 647 GCATTTTCATTCGGTTCAAAAACAAGCCTGTGATAAATTCGATCCGTCCTTCTA-CCCTC 705
|||||| |||||| ||||||| ||||||||||| ||||| || || |||||||| ||| |
Sbjct 720 GCATTTCCATTCGATTCAAAAGCAAGCCTGTGACAAATTTGACCCTTCCTTCTATCCC-C 778
Query 706 GGTTCAAGAAATGGTGTGATGACTACTTTTACATTAAGCACCGTGACGAAAGGCGAGGGC 765
| |||||||| ||||||||||||||||||||||| ||||||||||| || || ||||| |
Sbjct 779 GATTCAAGAAGTGGTGTGATGACTACTTTTACATCAAGCACCGTGATGAGAGACGAGGAC 838
Query 766 TTGGAGGGATATTTTTTGATGAT-TTGAATGACTATGATCAGGAGATGCTTCTGTCATTT 824
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 839 TTGGAGGGATATTTTTTGATGATCTT-AATGACTATGATCAGGAAATGCTTCTGTCATTT 897
Query 825 GCCACTGAATGTGCAAGCTCAGTGATACCAGCTTATATACCCATAGTAGA-AAAACGTAA 883
||||||||||| |||| ||||||| | || ||||||||||| |||||||| |||| | ||
Sbjct 898 GCCACTGAATGCGCAAACTCAGTGGTGCCGGCTTATATACCTATAGTAGAGAAAAGGAAA 957
Query 884 GGACACGCCATTTA-ACGAGCAACACAAGGAATGGCAACAATTGCGAAGGGGGCGATATG 942
| ||| | ||||| | ||||| ||||||| ||||||||| |||||| | ||||||||||
Sbjct 958 G-ACATGGAATTTACA-GAGCAGCACAAGGCATGGCAACAGTTGCGACGAGGGCGATATG 1015
Query 943 TTGAATTCAACTTGGTGTATGACCGTGGAACAACATTTGGTCTGAAGACCGGAGGGCGAA 1002
| |||||||||||||| ||||| || ||||| ||||||||||||||||| ||||| ||||
Sbjct 1016 TCGAATTCAACTTGGTATATGATCGGGGAACGACATTTGGTCTGAAGACAGGAGGACGAA 1075
Query 1003 TAGAGAGTATCCTTGTCTCTCTTCCGCTATCCGCAAGATGGGAATATGACCATAAACCAG 1062
||||||| || || |||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 1076 TAGAGAGCATTCTCGTCTCTCTTCCGCTTTCAGCAAGATGGGAATATGACCATAAACCGG 1135
Query 1063 AAGAAGGAACTGAGGAATGGAAACTATTAGATGCTTGTATCAATCCAAAAGAGTGGCTTT 1122
|||| || || || || ||||| ||||| |||||||| ||||| || || |||||| | |
Sbjct 1136 AAGAGGGGACCGAAGAGTGGAAGCTATTGGATGCTTGCATCAACCCGAAGGAGTGGATCT 1195
Query 1123 AGC 1125
|||
Sbjct 1196 AGC 1198
> AT4G03205.2 | Symbols: hemf2 | Coproporphyrinogen III oxidase
| chr4:1412785-1414782 FORWARD LENGTH=1738
Length=1738
Score = 645 bits (349), Expect = 0.0
Identities = 403/430 (94%), Gaps = 0/430 (0%)
Strand=Plus/Plus
Query 232 CTGCTCAGGATAAAGTCTGTGAAGCCATTGAAGCAGTTGAAGGAGGTCCTAAATTCAAGG 291
||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 298 CTGCTCAAGATAAAGTCTGTGAAGCCATTGAAGCAGTCGAAGAAGGTCCTAAATTCAAGG 357
Query 292 AAGATGTTTGGTCCCGACCCGGTGGAGGCGGCGGAATCAGCCGTGTTTTGCAAGATGGAA 351
||||||||||||| |||||||||||||| || |||||||| ||| |||||||||| ||||
Sbjct 358 AAGATGTTTGGTCTCGACCCGGTGGAGGTGGTGGAATCAGTCGTATTTTGCAAGACGGAA 417
Query 352 ATGTATGGGAGAAAGCTGGAGTTAATGTCTCTGTGGTTTATGGTGTTATGCCTCCTGAAG 411
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 418 ATGTATGGGAGAAAGCTGGAGTTAATGTCTCTGTGATTTATGGTGTTATGCCTCCTGAAG 477
Query 412 CTTATAGAGCTGCTAAAGCTGCCACGGCTGAGCAAAAACCTGGCCCGGTTCCGTTTTTTG 471
|||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||
Sbjct 478 CTTATAGAGCTGCTAAAGCTGCCACGTCTGAGCAAAAACCTGGTCCGATTCCGTTCTTTG 537
Query 472 CCGCCGGTATTAGCTCGGTTTTGCATCCTAAGAACCCTTTTGCTCCGACTCTGCATTTCA 531
|||| || | |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 538 CCGCTGGAACCAGCTCGGTTTTGCATCCTCAGAACCCTTTTGCTCCGACTCTGCATTTCA 597
Query 532 ATTACCGTTACTTCGAGACCGATGCTCCAAAGGATGTCCCTGGAGCTCCAAGGCAATGGT 591
||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 598 ATTACCGCTATTTCGAGACCGATGCTCCAAAGGATGTTCCTGGAGCTCCGAGGCAATGGT 657
Query 592 GGTTCGGTGGTGGGACTGATTTCACACCTGCTTACATCTTCGAAGAGGACGTCAAGCATT 651
||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
Sbjct 658 GGTTCGGTGGTGGGACTGACTTCACACCTGCTTACATCTTTGAAGAAGACGTCAAGCACT 717
Query 652 TTCATTCGGT 661
||||||||||
Sbjct 718 TTCATTCGGT 727
Score = 298 bits (161), Expect = 8e-80
Identities = 179/188 (95%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 956 GGTGTATGACCGTGGAACAACATTTGGTCTGAAGACCGGAGGGCGAATAGAGAGTATCCT 1015
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1474 GGTGTATGACCGCGGAACAACATTTGGTCTGAAGACTGGAGGACGAATAGAGAGTATCCT 1533
Query 1016 TGTCTCTCTTCCGCTATCCGCAAGATGGGAATATGACCATAAACCAGAAGAAGGAACTGA 1075
|||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1534 TGTCTCTCTTCCGCTATCTGCGAGATGAGAATATGACCATAAACCTGAAGAAGGAACTGA 1593
Query 1076 GGAATGGAAACTATTAGATGCTTGTATCAATCCAAAAGAGTGGCTTTAGCTAATTAATTG 1135
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1594 GGAATGGAAACTATTAGATGCTTGTATCAATCCAAAAGAGTGGCTTTAGTTAATTAATTG 1653
Query 1136 TGATTATT 1143
|| |||||
Sbjct 1654 TGGTTATT 1661
Score = 182 bits (98), Expect = 9e-45
Identities = 117/126 (93%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 831 GAATGTGCAAGCTCAGTGATACCAGCTTATATACCCATAGTAGAAAAACGTAAGGACACG 890
|||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct 1258 GAATGTGCAAGCTCAGTGATACCAGCTTCTATACCCATAGTAGAGAAACGTAAAGACACA 1317
Query 891 CCATTTAACGAGCAACACAAGGAATGGCAACAATTGCGAAGGGGGC-GATATGTTGAATT 949
|||||||||||||||||||||| ||||||||| |||||||||| | |||||||||||||
Sbjct 1318 CCATTTAACGAGCAACACAAGGCATGGCAACAGCTGCGAAGGGG-CAGATATGTTGAATT 1376
Query 950 CAACTT 955
||||||
Sbjct 1377 CAACTT 1382
Score = 145 bits (78), Expect = 1e-33
Identities = 86/90 (96%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 742 AGCACCGTGACGAAAGGCGAGGGCTTGGAGGGATATTTTTTGATGATTTGAATGACTATG 801
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 AGCACCGTGATGAGAGGCGAGGGCTTGGAGGGATATTTTTTGATGATTTGAATGACTATG 1144
Query 802 ATCAGGAGATGCTTCTGTCATTTGCCACTG 831
|||| ||||||||||||||||| |||||||
Sbjct 1145 ATCAAGAGATGCTTCTGTCATTCGCCACTG 1174
Score = 119 bits (64), Expect = 7e-26
Identities = 78/85 (92%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 659 GGTTCAAAAACAAGCCTGTGATAAATTCGATCCGTCCTTCTACCCTCGGTTCAAGAAATG 718
|||| |||| |||||||| |||||||| |||||||| ||||||||| |||| ||||||||
Sbjct 808 GGTTTAAAAGCAAGCCTGCGATAAATTTGATCCGTCGTTCTACCCTTGGTTTAAGAAATG 867
Query 719 GTGTGATGACTACTTTTACATTAAG 743
|||||||||||||||||||||||||
Sbjct 868 GTGTGATGACTACTTTTACATTAAG 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56174409855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5