BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943400
Length=566
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 708 0.0
AT4G03140.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 189 2e-47
> AT4G03150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:1393614-1394574
REVERSE LENGTH=720
Length=720
Score = 708 bits (383), Expect = 0.0
Identities = 443/471 (94%), Gaps = 7/471 (1%)
Strand=Plus/Plus
Query 100 TTTCCGGCGACGATTCGGAGAAGACCAGTCAGCTTTCCGATAACATCGGCGCCGAAATTT 159
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 157 TTTCCGGCGACGATTCGGAGAAGATCAGTCAGCTTTCCGATAACATCTGCGCCGAAATTT 216
Query 160 CCGTCTTTGAAACT-CATAAAGTCTCAATCTTCGACCCATGAAAGG-GAAGGAGACTCAG 217
|||||||||||||| || |||||||||||| |||| ||||| |||| |||| ||||||||
Sbjct 217 CCGTCTTTGAAACTCCA-AAAGTCTCAATCGTCGATCCATG-AAGGAGAAGAAGACTCAG 274
Query 218 AATCATCCGTACAAGCCCTCACGATTCCAAAAGAGTGGTTGCTCCCTTCTAGGGCCATTG 277
||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 275 AATCAGCCGTACAAGCCCTCACGATTCCAGAAGAGTGGTTGCTCCCTTCTAGAGCCATTG 334
Query 278 AGGAATCTGAATGGTTGAGAGTAACTTTGCACAAATGGTTGGATGATGAGTATTGCCCTG 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 AGGAATCTGAATGGTTGAGAGTAACTTTGCACAAATGGTTGGATGATGAGTATTGCCCTG 394
Query 338 AGCCAACCAATGTGGAGATCAGTGAAGTAGCTGCAAAGTCATACTACAGTTCATTGCTTG 397
|||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| |
Sbjct 395 AGCCAACCAATGTGGAGATCAGTGAAGTAGCTGCAAAGTCTTACTATAGTTCACTGCTAG 454
Query 398 AGAAAGAAACTGACATTGGAGAGATTTTGTTGAAGATGGCTCAAGATTTAACCTCAATTT 457
||||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 455 AGAAAGAAAGTGACATGGGAGAGATTTTGTTGAAGATGGCTCAAGATTTAACTTCCATTT 514
Query 458 CATACCAAGAAAGCTTCCATGGAGCTTTCACATCCGCAAATGCGGCTATAAATTTGATTG 517
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 515 CATACCAAGAAAGCTTCCATGGAGCTTTCACATCCGCTAATGCAGCTATAAATTTGATTG 574
Query 518 TTGACAGAATAGAAACCGGCCTACTCTAGTCTAG-CGACT-CTAGTCTAGT 566
||||||||||||||||||||||| |||||||||| | | | | ||||||||
Sbjct 575 TTGACAGAATAGAAACCGGCCTAGTCTAGTCTAGTCTAGTGC-AGTCTAGT 624
> AT4G03140.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr4:1392121-1393842 FORWARD LENGTH=1282
Length=1282
Score = 189 bits (102), Expect = 2e-47
Identities = 124/134 (93%), Gaps = 3/134 (2%)
Strand=Plus/Minus
Query 435 GGCTCAAGATTTAACCTCAATTTCATACCAAGAAAGCTTCCATGGAGCTTTCACATCCGC 494
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 GGCTCAAGATTTAACTTCCATTTCATACCAAGAAAGCTTCCATGGAGCTTTCACATCCGC 1223
Query 495 AAATGCGGCTATAAATTTGATTGTTGACAGAATAGAAACCGGCCTACTCTAGTCTAG-CG 553
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1222 TAATGCAGCTATAAATTTGATTGTTGACAGAATAGAAACCGGCCTAGTCTAGTCTAGTCT 1163
Query 554 ACT-CTAGTCTAGT 566
| | | ||||||||
Sbjct 1162 AGTGC-AGTCTAGT 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27176673527
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5