BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943403
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03120.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 760 0.0
> AT4G03120.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr4:1385660-1387739 FORWARD LENGTH=1119
Length=1119
Score = 760 bits (411), Expect = 0.0
Identities = 456/477 (96%), Gaps = 5/477 (1%)
Strand=Plus/Plus
Query 1 GGTTCTTTGGAATC-TTCT-AACGATGCCGAGGTATTACTGTGATTATTGCGATACTTAT 58
|||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 65 GGTTCTCTGGAA-CTTTCTGAACGATGCCGAGGTATTACTGTGATTATTGCGATACTTAT 123
Query 59 CTCACTCACGATTCCCCATCAGTAAGGAAGCAGCACAATGCTGGTTACAAGCACAAGGCG 118
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 124 CTCACTCACGATTCCCCATCAGTAAGGAAGCAGCACAATGCTGGTTACAAACACAAGGCG 183
Query 119 AATGTGAGAATATACTATCAGCAATTTGAGGAACAACAAACCCAAAGTTTGATTGATCAG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 AATGTGAGAATATACTATCAGCAATTTGAGGAACAACAAACCCAAAGTTTGATTGATCAG 243
Query 179 AGAATTAAGCAACATCTTGACCAAACTGGAGGGTATCCACAGGTTGGTGCTGTGTTTAAC 238
||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 244 AGAATTAAGGAACATCTTGGCCAAACTGGAGGGTATCAACAGGTTGGTGCTGTGTTTAAT 303
Query 239 CAGCATATGCTCGCCAGACCTCGCCCTCCGATGATGCTACCACCTGGAGGTATGCCTATG 298
||||||||||| || |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 304 CAGCATATGCTTGCAAGACCTCGCCCTCCCATGATGCTACCACCTGGAAGTATGCCTATG 363
Query 299 GGTATGCGACCTCCTGTTCTACCTAGACCCATGATGCCTGGTCAAGGTTACATGCCTCCT 358
|||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||
Sbjct 364 GGTATGCGACCTCCTGTTCTGCCTAGACCCATGATGCCTCCTCAAGGTTATATGCCTCCT 423
Query 359 C-AGGGAGTGCCACAGATGATGGCACCACCTGGTGCTCCTCTACCTCCACCTCCACAAAA 417
| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 424 CCAGG-AGTACCACAGATGATGGCACCGCCTGGTGCTCCTCTACCTCCACCTCCACAAAA 482
Query 418 TGGTATTCTGAGGCCACCAGGAATGGCTCCCATACCAGGTCAAGGTGGCGGACCACC 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TGGTATTCTGAGGCCACCAGGAATGGCTCCCATACCAGGTCAAGGTGGCGGACCACC 539
Score = 387 bits (209), Expect = 1e-106
Identities = 219/224 (98%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 431 CCACCAGGAATGGCTCCCATACCAGGTCAAGGTGGCGGACCACCTCCCAATTATAATGGA 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CCACCAGGAATGGCTCCCATACCAGGTCAAGGTGGCGGACCACCTCCCAATTATAATGGA 594
Query 491 CTACCTCCTCCTCCTCCTTATCATACAAATCCTGCTGTTCCACCAAGTGGTAGTTTCAAC 550
|||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct 595 CTACCTCCTCCTCCTCCTTATCATACAAATCCAGCTGCTCCACCAAGTGGTAATTTCAAC 654
Query 551 AATCCGAACCTCAACAATCCGAACCCCAGTGCTGAATCTCCTGAAAGCAATGAGTAGAGT 610
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 655 AATCCAAACCTCAACAATCCGAATCCCAGTGCTGAATCTCCTGAAAGCAATGAGTAGAGT 714
Query 611 TAGTAGGTCTGAATGAATCATTTTTCTCCTGCCAAAAAATTCTC 654
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TAGTAGGTCTGAATGAATCATTTTTCTCCTGCCAAAAAATTCTC 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5