BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943413
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03010.1 | Symbols: | RNI-like superfamily protein | chr4:1... 1818 0.0
> AT4G03010.1 | Symbols: | RNI-like superfamily protein | chr4:1329952-1331139
FORWARD LENGTH=1188
Length=1188
Score = 1818 bits (984), Expect = 0.0
Identities = 1121/1189 (94%), Gaps = 2/1189 (0%)
Strand=Plus/Plus
Query 23 ATGAAATTTGCTACTCTGTTTTGGGTTTTGCTGCTTCTTCTTCGATTCGGTTTATTCGTG 82
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGAGATTTGCTACTCTGTTTTCGGTTTTGCTGCTTCTTCTTCGATTCGGTTTAATCGTG 60
Query 83 AAATCGATCATCGTACCAGTTGATTTCTTGGCTCTACAAGCTATTCGTAAATCGCTCGAT 142
||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 61 GAATCGATCATCGTCCCAGTTGATTTCTTGGCTCTGCAAGCGATTCGTAAATCACTCGAT 120
Query 143 GATTTACCAGGTTCAAATTTCTTCGATTCATGGGATTTTACCTCTGACCCTTGTAACTTC 202
||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 121 GATTTGCCAGGTTCCAATTTCTTCGATTCATGGGATTTCACCTCTGATCCTTGTAACTTC 180
Query 203 GCCGGAGTTTACTGTGACGGTGATAAAGTAACCGCGCTTAACCTCGGTGATCCAAGAGCC 262
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCAGGAGTTTACTGTGACGATGATAAAGTAACCGCGCTTAACCTCGGTGATCCAAGAGCC 240
Query 263 GGTTCACCCGGTTTATCTGGTCGGATTGACCCGGCTATTGGAAAACTCTCTGCTTTAACG 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTTCACCCGGTTTATCTGGTCGGATTGACCCGGCTATTGGAAAACTCTCTGCTTTAACG 300
Query 323 GAGCTCTCGATCGTACCGGGTCGGATCATGGGTTCGTTACCGCATACGATCTCGCAGTCA 382
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 301 GAGCTCTCTATCGTCCCGGGTCGGATCATGGGTTCGTTACCGCATACAATCTCACAGTCA 360
Query 383 AAGAATCTTCGATTTCTCGCAATCAGTCGGAATTTTC-TCTCCGGTGAGATTCCGGCGAG 441
||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||
Sbjct 361 AAGAATCTTCGATTTCTCGCAATCAGTCGGAATTT-CATCTCCGGTGAGATTCCAGCGAG 419
Query 442 TCTCGGCGAGCTTCGGAGACTCAAAACACTTGATCTGAGCTATAATCAGCTAACCGGGTC 501
||| ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||
Sbjct 420 TCTAAGCGAGCTTCGGGGACTCAAAACGCTTGATTTGAGCTATAATCAGCTAACCGGGTC 479
Query 502 GATTCCTCCGCCAATCGGGTACTTACCGGAGTTATCCAATCTGATTCTATGTCACAATCA 561
||| |||||| ||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 480 GATCCCTCCGTCAATCGGATCCTTACCGGAGCTATCCAATCTGATTCTATGTCACAATCA 539
Query 562 CTTGAACGGATCAATTCCTCAATTCCTCTCACAAAGCTTAACACGAATCGATCTCAAACG 621
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||
Sbjct 540 CTTGAACGGATCAATTCCTCAATTCCTCTCACAATCCTTAACCCGAATCGATCTCAAGCG 599
Query 622 CAATAATCTCACCGGCATAATCTCTCCGACGTCTCTTCCGCCGTCGTTACAATATCTCTC 681
||| ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 600 CAACAATCTCACCGGTATAATTTCTCTGACGTCTCTTCCGCCGTCGTTACAATATCTCTC 659
Query 682 ACTCGCTTGGAACCACCTAACCGGACCAGTAAACCGGGTTTTACTCAGATTAAACCAGCT 741
|||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 660 GCTCGCTTGGAACCAGCTAACCGGTCCAGTATACCGGGTTTTACTCAGATTAAACCAGCT 719
Query 742 CAATTACCTCGATCTCAGCTTAAACCGGTTCACCGGTGCAATCCCCGGTCAGATCTTCAC 801
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CAATTACCTTGATCTCAGCTTAAACCGGTTCACCGGTGCAATCCCCGGTCAGATCTTCAC 779
Query 802 CTTCCCGATCACCAACCTCCAATTACAACGCAATTTCTTCTACGGCGTGATTCAACCGGT 861
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 780 CTTCCCGATCACCAATCTTCAATTACAACGCAATTTCTTCTACGGCGTGATCCAACCGCC 839
Query 862 GAATCAGGTAACAATTCCGACCGTCGATTTAAGCTATAACAGATTCTCCGGCGAGCTTTC 921
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 GAATCAGGTAACAATACCAACCGTCGATTTAAGCTACAACAGATTCTCCGGCGAGCTTTC 899
Query 922 TCCGCTTCTCTCCAACGTACAGAATATCTATCTAAACAATAACCGGTTCACCGGTCAAGT 981
|||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||
Sbjct 900 TCCGCTTCTCTCCAACGTACAGAACCTATATTTGAACAATAACCGGTTCACCGGTCAAGT 959
Query 982 ACCAGTTAGCTTCGTAGATCGGTTATTGGCATCGAATATACAAACACTATACCTCCAACA 1041
|| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 960 TCCGGTTAGCTTCGTGGATCGGTTATTGGCATCGAATATTCAAACACTGTACCTCCAACA 1019
Query 1042 CAACTTCTTGACGGGAATACAAATTAGCCCCGCGGCGGATATTCCGGTGAGCAGCTCGCT 1101
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1020 CAACTTCTTGACGGGAATACAAATTAGCCCGGCGGCAGATATTCCGGTGAGCAGCTCGCT 1079
Query 1102 GTGTCTGCAATACAACTGTATGGTGCTACCGGTACAGACGCCGTGTCCGGTTAAGGCCGG 1161
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1080 GTGTCTGCAATACAACTGTATGGTGCTACCGGTACAGACGCCGTGTCCGGTTAAAGCCGG 1139
Query 1162 TTTGCAGAAAACCAGACCCACAACGCAGTGCAACGAGTGGCGAGGATAA 1210
|||||||||||| ||||||||||||||||||| |||||||||||| |||
Sbjct 1140 TTTGCAGAAAACTAGACCCACAACGCAGTGCAGCGAGTGGCGAGGGTAA 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5