BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943421
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02920.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 2017 0.0
> AT4G02920.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G03340.1);
Has 41 Blast hits to 41 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:1292523-1294861
FORWARD LENGTH=1744
Length=1744
Score = 2017 bits (1092), Expect = 0.0
Identities = 1234/1302 (95%), Gaps = 12/1302 (1%)
Strand=Plus/Plus
Query 1 TTCATCTTCAACAAAC-AAAAATGATCAAGCTTTGCTTCATGACTTCTCATGGCTATTCA 59
|||| || |||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 273 TTCAGCTACAACAACCAAAAAATGATCAAGCTTTGCTTCATGACTTCTCATGGTTATTCA 332
Query 60 ATTCCTGGCCTTGGTCTTCCTCAAGACCTCTGTAACACCGAAATCATCAAGCAGAATAGC 119
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 333 ATCCCTGGCCTTGGTCTTCCTCAAGACCTCTGCAACACCGAAATCATCAAGCAGAATAGC 392
Query 120 CGGTCTCATCTGGTGAATCCCGGAGCAAGACAAGAGATCATACCTGCAAGCTCCTTCAAT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 CGGTCTCATCTGGTGAATCCCGGAGCAAGACAAGAGATCATACCTGCAAGCTCCTTCAAT 452
Query 180 CTGAATCCAGA-CT-T-GGAACCATGGAAACCTGTTTCTTCATTTAGCCAATTCGTGGAG 236
|||||| |||| || | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 453 CTGAATACAGAACTCTTGGAACCATGGAAACCGGTTTCTTCATTTAGCCAATTCGTGGAG 512
Query 237 ATTGATTCAGCCATGATGAAACCTCTGCTCATGGATGTTCATGAGACGGCACCAGAATCG 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 ATTGATTCAGCCATGATGAAACCTCTGCTCATGGATGTTCATGAGACGGCACCAGAATCT 572
Query 297 CTGGTTTTAAGCTTTGGAATTGCTGATAAGTCTGCGAGACAAGAAAAGGTGATGGAGTTT 356
||| |||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||
Sbjct 573 CTGATTTTGAGCTTTGGAATCGCTGATAAGTTTGCAAGACAAGAAAAGGTGATGGAGTTT 632
Query 357 CTTCTGTCTCAGTCAGAGGAGTTCAAGGAAAAAGGATTCAATATGTCTCTGTTAAATGAA 416
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 633 CTTCTGTCTCAGTCAGAGGAGTTCAAGGAAAAAGGATTCGATATGTCGCTGTTAAATGAA 692
Query 417 TTGATGGAATTAGAGGCTATGAAATCCAGTTCTCAGCTACGAGCATATGATACTTCCTCT 476
|||||||| || ||| |||||||||||||||||||||||||| | |||||||||||||||
Sbjct 693 TTGATGGAGTTTGAGTCTATGAAATCCAGTTCTCAGCTACGACCGTATGATACTTCCTCT 752
Query 477 GTTCTTTACTTGAATCAAGAATTAGGGAAACCGGTTTTGGATCTCGTTGGGGATATGATG 536
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 753 GTTCTTTACTTGAATCAAGAATTAGGGAAACCGGTTTTGGATCTCGTTAGGGATATGATG 812
Query 537 GATAATCCAGAGCTCTCTGTGCGATCGAATGGTCACGTTCTGTTCTCTTCAAGTAGCAAT 596
|| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 813 GAGAATCCAGAGTTCTCTGTGCGATCGAATGGTCATGTTCTGTTCTCTTCAAGTAGCAAT 872
Query 597 TGTGAGTTGAATGATCTACTTTCTATTGCTTCCGAGTTCAATTTGTCAAGGAATTCAACA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 CCTGAGTTGAATGATCTACTTTCTATTGCTTCCGAGTTCAATTTGTCAAGGAATTCAACA 932
Query 657 A-AA--TGGAGACAGCTCTCACCGCTTATCCCACACTTTCAGAGGTTTGAAAGTGAAGTA 713
| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 933 ACAAAATGGAGACAGCTCTCACCGCTTATCCCACACTTTCAGAGGTTTGAAAGTGACGTA 992
Query 714 TTAACACCAGCTAAGCTGAAAGCAGTTACAGT---AGCACCTTTGAAGAGTCCTGAGAAA 770
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 993 TTTACACCGGCTAAGCTGAAAGCAGTTACAGTGCTAGCACCTTTGAAGAGTCCTGAGAAA 1052
Query 771 ACCAGGCTCAAGTCACCAAGGAAACACAACACGAAGCAAAAAGCCAAAGAGAGGGACCTA 830
| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1053 AGCAGGCTCAAGTCACCAAGGAAACACAACACGAAGCGAAAAGCTAAAGAGAGGGACCTA 1112
Query 831 TACAAAAGAAACCATCTCCACGCTTACGAGAGCCTTCTGTCTTTAATGATAGGCAATGAT 890
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1113 TACAAAAGAAATCATCTCCACGCTTACGAGAGCCTTCTCTCTTTAATGATAGGCAATGAT 1172
Query 891 CATCAACACAAACACACAACAGTACTCTCTTTACAGAAATCATGTGGAGAGCTCTCAGAG 950
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 CATCGACACAAACACACAACAGTACTCTCTTTACAGAAATCATGTGGAGAGCTCTCAGAG 1232
Query 951 CTTCTGACTCAGTTCTCTGTCACTGTTGCTGGAACTGGAATCGCTGTGCT-TTTCTCTGT 1009
|||||||||||||||||| |||||| |||||||||||||||||||||||| ||| |||||
Sbjct 1233 CTTCTGACTCAGTTCTCTATCACTGCTGCTGGAACTGGAATCGCTGTGCTCTTT-TCTGT 1291
Query 1010 CGTCTGTAGCCTTGCTTCAAGGCGTGTACCCTTTTGCGCAAACAAGTTCTTTGACACTGG 1069
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1292 CGTATGTAGCCTTGCTTCAAGGCGTGTACCCTTTTGCGCAAATAAGTTCTTCGACACTGG 1351
Query 1070 GCTTGGTTTGAGTTTGGTAATACTGTCTTGGGCTGTGAATAGACTCAGGGAAGTGATTGT 1129
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1352 GCTTGGTTTGAGTTTGGTAATACTGTCATGGGCTGTGAATAGACTCAGGGAGGTGATTGT 1411
Query 1130 TCATGTCAATAGGAAAGCGAACAAACCCTGTTCAAGTTTGAAGGATGACGAAATCATAAA 1189
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 1412 TCATGTCAATAGGAAAGCGAACAAGCCATGTTCAAGTTTGAAAGATGACGAAATCATAAA 1471
Query 1190 CAGTGTGGAGAAAAGTATCAAGGAGGTTTACTACAGAGCTGCCACTGTACTCGCGGTGTT 1249
||||||||||| |||||| ||||||||||||||||||||||| || ||| ||||||||||
Sbjct 1472 CAGTGTGGAGAGAAGTATGAAGGAGGTTTACTACAGAGCTGCAACGGTAATCGCGGTGTT 1531
Query 1250 TGCACTTAGGTTTGCATGTTGAGAACTCACGGTGAGAGGTAA 1291
||| |||||||||||||||||| || || ||||||||||||
Sbjct 1532 TGCGCTTAGGTTTGCATGTTGAAAAATCGGGGTGAGAGGTAA 1573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63503689425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5