BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943433
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02810.1 | Symbols: | Protein of unknown function (DUF3049)... 1000 0.0
> AT4G02810.1 | Symbols: | Protein of unknown function (DUF3049)
| chr4:1256162-1257212 FORWARD LENGTH=1051
Length=1051
Score = 1000 bits (541), Expect = 0.0
Identities = 766/866 (88%), Gaps = 50/866 (6%)
Strand=Plus/Plus
Query 1 TCTCTTAACATAACAC-AAACATGTCCATAGTTGTTGGCCAAG-TCAGCACACATCTTCC 58
|||||||||| ||||| ||| |||||||| ||||||||||||| | | || |||||||||
Sbjct 71 TCTCTTAACACAACACAAAAAATGTCCATCGTTGTTGGCCAAGCTTACCA-ACATCTTCC 129
Query 59 CAAGAAGCAAGTAAGCCAAAATCTTGACGTGGGTGGATGGAGTTTCCTACAATATTTCTC 118
| ||||||||||||||||||| |||||||||||||||||||||| | |||||||||||
Sbjct 130 C---AAGCAAGTAAGCCAAAATCCTGACGTGGGTGGATGGAGTTTCTTGCAATATTTCTC 186
Query 119 TGAACCAAAAGGCATTGTCCAAAACAGAGAAGACGACACAAAGAAAACAGCTTATGTCCA 178
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 187 TGAGCCAAAAGGCATTGTCCAGAACAGAGAAGACGACACAAAGAAAACAGCTTATGTCTA 246
Query 179 TCCGATCGAGAAGCGTTCCGTAGCTAAACTGAGCCTTGAGATGTGCACAGAGAGCCTGGG 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 247 CCCGATCGAGAAGCGTTCCGTAGCTAAACTGAGCCTTGAGATGTGCACAGAGAGCCTCGG 306
Query 239 GACAGAGAATGGGAGTGATAGTGGAGACGAGATGTCGTTACTTGCGCTTGAAGCAACCAA 298
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GACCGAGAATGGGAGTGATAGTGGAGACGAGATGTCGTTACTTGCGCTTGAAGCAACCAA 366
Query 299 TATTTCAATGATT--TC-TCTTACTAAGAAACCTCAAAAAGAAACTAACCTT-ATGACCC 354
|||||||| || | || |||||||| |||||||||||||||||||| | || |||||||
Sbjct 367 TATTTCAAAGAGTCCTCGTCTTACTACGAAACCTCAAAAAGAAACTAGC-TTCATGACCC 425
Query 355 GTGAAAACAGTTTTCCTCCGCCGTTAAAATCCGTAAACGGATTCAACAATAGCCGTATGG 414
|||| |||||||||||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 426 GTGAGAACAGTTTTCCTCCGCCGCTAAACTCCGTCAACGGATTCAACAATAGCCGTATGG 485
Query 415 TGAAATCGTATAAAGAAGATGGTCGTCTTGTTGTTCAAGCAATTAGGGTTTGTTCACCAC 474
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 486 TGAAATCGTATAAAGAAGACGGTCGTCTTGTTGTTCAAGCAATTAGGGTTTGTTCTCCAC 545
Query 475 CTCGTTGCTTTGTATCTGAACGTCGTGAAGGAAGGCTTCGTCTCTGTTTATCAGAGAATT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 546 CTCGTTGCTTTGTATCTGAACGTCGTGAAGGAAGGCTTCGTCTCTGTTTATCACAGAATT 605
Query 535 CTTTGAATAGTCAAGACGGAGAAGAAGAGTTCCAAGAA-AA--TGAA--T---C----CG 582
| |||||||| ||||||| |||||||||||| ||||| || |||| | | ||
Sbjct 606 CATTGAATAGCCAAGACGCAGAAGAAGAGTTTGAAGAAGAAGATGAAGATGATCAATACG 665
Query 583 GATTC-GAGG--GTC-ATgaagat-aa-a-ga-g--gaaga-gaa-a-g--ga-gaagaa 626
|| | |||| | | ||||| || | || | ||||| ||| | | || ||||||
Sbjct 666 -ATGCAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA 724
Query 627 gaagaagacgattcaga-g--gaaga--a-gaggaggGCATTGTGGGGAATAACGAGAAC 680
|||||||| || ||| | ||||| | ||||||||||||||||||||||| ||||||
Sbjct 725 GAAGAAGAAGAAGAAGAAGAAGAAGAGGACGAGGAGGGCATTGTGGGGAATAATGAGAAC 784
Query 681 TTTGAGGGTAAAATTGGAAATAAAAAGTTTAGCAGA-AGGCCAAAGAGGAGATGCAATGA 739
||||||||||||| ||||||||||||| |||||| | |||||||| ||||||||||||||
Sbjct 785 TTTGAGGGTAAAAGTGGAAATAAAAAGGTTAGCA-ACAGGCCAAAAAGGAGATGCAATGA 843
Query 740 AAATGGATGTGAGCCTAAAACCATGCTTAACTGGAAGGAGCAACAATTTTGGGTTACCAC 799
||||||||||||||||||||| |||||||| |||||| |||| ||||||||||| |||||
Sbjct 844 AAATGGATGTGAGCCTAAAACTATGCTTAATTGGAAGCAGCAGCAATTTTGGGTGACCAC 903
Query 800 TTAATGGAAAAT--TCAACTCAGCAA 823
||||||| || | ||||||||||||
Sbjct 904 TTAATGGGAATTACTCAACTCAGCAA 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40086849306
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5