BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943434
Length=1046
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02800.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1467 0.0
> AT4G02800.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G01970.1);
Has 3209 Blast hits to 2720 proteins in 308 species: Archae
- 13; Bacteria - 213; Metazoa - 1207; Fungi - 247; Plants -
183; Viruses - 21; Other Eukaryotes - 1325 (source: NCBI BLink).
| chr4:1250015-1251681 FORWARD LENGTH=1316
Length=1316
Score = 1467 bits (794), Expect = 0.0
Identities = 973/1057 (92%), Gaps = 22/1057 (2%)
Strand=Plus/Plus
Query 1 TCTCTCTTTCTCTACCTCCATCAATGGCTGCTTCTGTTGAAACTCCATCAACTAATCATA 60
|||||||||||||| |||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 89 TCTCTCTTTCTCTATCTCCATCAATGGCTGCTTCTGTCGAAACTCCTTCACCTAATCATA 148
Query 61 CCAACTACGAAGGAACAAGCTTGAACATGGTTTCTACAACTTCTTTTGATTCTTCTCCAT 120
| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| | |
Sbjct 149 CGAACAACGAAGGAACACGCTTGAACATGGTTTCTGCAACTTCTTTTGATTCTTCTTC-T 207
Query 121 CGAT-TATTAGTCCATCTTCAGACAAGCGTCTCTGGAGCAATCTACGTAACAGGGTTGAT 179
| || ||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 208 CCATCGGTTAGTCCATCTTCAGACAAACGTCTCTGGAGCAATGTACGTAACAGGGTTGAT 267
Query 180 GTTCTTCTCGAAGAAAATAGCAAATATCACAAACCCATTGCCGCCGATACGATTGCTGGA 239
|||||||||||||||||||||||| ||||||||||| || || ||||||||||| |
Sbjct 268 GTTCTTCTCGAAGAAAATAGCAAAAATCACAAACCCGTT---ACCAATACGATTGCTATA 324
Query 240 GAAACAGAGAGATCAATGAGATTTAAGAATGATTCGATGCTTTTGCTTAAAGGGTTTGAT 299
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 GAATCAGAGAGATCAAAGAGATTTAAGAATGATTCGATGCTTTTGCTTAAAGGGTTTGAT 384
Query 300 TCGGTTTCTCATACTCTGTCTCAGCTTTCTAGTAATCTCGACAATGCCCTTCAGGGAGTT 359
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 385 TCTGTTTCTCATACTCTGTCTCTCCTTTCTAGTAATCTCGACAATGCCCTTCAGGGAGTT 444
Query 360 AGAGAATTAGCTAAACCACCTTCATTA-TCTGAGATACTCCACTCGAATCTTAAAGCTGA 418
|||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||
Sbjct 445 AGAGAATTAGCTAAACCACCTTCA-TATTCTGAGATACTCCATTCGAATCTCAAAGCTGA 503
Query 419 TCAGATTCAACGACAAC--AAA-aag-a-a-g-a-a-gaagaagagaGTAAAGGGACGAA 469
||||||||||||||||| ||| ||| | | | | | ||||||||||||||||||| |||
Sbjct 504 TCAGATTCAACGACAACAGAAAGAAGAAGATGAAGAGGAAGAAGAGAGTAAAGGGAAGAA 563
Query 470 GAGGAAACACGAATCTGATGTTGAACAAAAAGAAGATTCTTCGAATGAGGAAGAGCAGAG 529
||||||||||||||||||||||||||||| ||||||||| || ||||| |||||| ||||
Sbjct 564 GAGGAAACACGAATCTGATGTTGAACAAACAGAAGATTCGTCTAATGAAGAAGAGAAGAG 623
Query 530 ACCAAAAGAGAGGAAAATCATGAACAAGGCTAAGAACATTGCGATATCCATGGCAGCGAA 589
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 624 ACCAAAAGAGAGGAAAATCATGAAGAAGGCTAAGAACATTGCTATATCCATGGCAGCTAA 683
Query 590 AGCGAATTCGCTTGCAAGAGAGCTTAAATCCATAAAATCCGACTTGAGTTTCATCCAAGA 649
||||||||||||||||||||||||||| | |||||||| ||| ||||||| ||||||||
Sbjct 684 GGCGAATTCGCTTGCAAGAGAGCTTAAAACTATAAAATCAGACCTGAGTTTTATCCAAGA 743
Query 650 ACGTTGTGGATTACTTGAAGAAGAGAACAAGAGACTCAGAGATGGGTTTGTGAAAGGTGT 709
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 ACGTTGTGGGTTGCTTGAAGAAGAGAACAAGAGACTCAGAGATGGGTTTGTGAAAGGTGT 803
Query 710 TAGACCTGAAGAAGATGATTTGGTGAGGCTACAATTGGAGGTGTTGCTTACGGAGAAAGC 769
|||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 804 TAGACCTGAAGAAGATGATTTGGTGAGGCTACAACTGGAGGTGTTGCTTGCAGAGAAAGC 863
Query 770 TAGATTAGCGAATGAGAACGCGAATTTAGTTAGAGAAAATCAGTGTCTTCACCAGATGGT 829
|||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 864 TAGACTAGCGAATGAGAACGCGAATTTAGTTAGGGAAAATCAGTGTCTTCATCAGATGGT 923
Query 830 TGAGTACCATCAGATCACATCTCAAGATCTATCTCCTTCATATGAACAAGTTGTTCAAGG 889
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 TGAGTACCATCAGATTACATCTCAAGATCTATCTCCTTCATATGAACAAGTTGTTCAAGG 983
Query 890 TTTATGCTTAGATTTCTCATCCCCTGTGCCTCAATACGATGATGATGAAGAAGAAGAGGA 949
||| ||||||||||||||||||||| ||||||||||||||||||| | ||||||||| |
Sbjct 984 TTTTTGCTTAGATTTCTCATCCCCTCTGCCTCAATACGATGATGA--A-GAAGAAGAGCA 1040
Query 950 TGAAACAAGAGCTCGAGATGTCTCCAAAGCCCTTAACGAAAGCTTTGAAAAAGCAGCAGA 1009
|||||||||||||||||||||||| |||||||| |||||||||||||||||||| | | |
Sbjct 1041 TGAAACAAGAGCTCGAGATGTCTCGAAAGCCCTCAACGAAAGCTTTGAAAAAGCTG-A-A 1098
Query 1010 AGAAGAACAATATTGATCAAGTCATTGTTTAGATTTT 1046
||||||||||| | |||||| || |||||||| |||
Sbjct 1099 -GAAGAACAATACTAATCAAGACACTGTTTAGACTTT 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51289064087
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5