BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943443

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02730.1 | Symbols:  | Transducin/WD40 repeat-like superfami...   460    3e-129


> AT4G02730.1 | Symbols:  | Transducin/WD40 repeat-like superfamily 
protein | chr4:1207725-1209287 FORWARD LENGTH=1257
Length=1257

 Score =  460 bits (249),  Expect = 3e-129
 Identities = 278/292 (95%), Gaps = 2/292 (1%)
 Strand=Plus/Plus

Query  90    AAGCTGTCGAACTATGCCACGGGGAAGTTTCTGAAAGTGTACACAGGACATACCAACAAA  149
             ||||||||||||||||| |||||||||||| |||||||||| ||||||||||| ||||||
Sbjct  746   AAGCTGTCGAACTATGCGACGGGGAAGTTTTTGAAAGTGTATACAGGACATACTAACAAA  805

Query  150   GTGTTCTGTATCACATCAGCGTTTTCTGTAACGAATGGGAAGTACATTGTGAGTGGATCA  209
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  806   GTGTTCTGTATCACATCGGCGTTTTCTGTAACGAATGGGAAGTACATTGTGAGTGGATCA  865

Query  210   GAGGACAATTGTGTGGATCTGTGGGATCTTCAA-CAGAGAAATATACTGCAGAGATTGGA  268
             ||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||| | ||
Sbjct  866   GAGGATAATTGTGTGTATCTGTGGGATCTTCAAGC-GAGAAATATACTGCAGAGACTAGA  924

Query  269   AGGCCACATAGACGCAGTGATCTCAGTGAGTTGCCATCCGGTTCAGAACGAGATAGCTTC  328
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  925   AGGCCACACAGACGCAGTGATCTCAGTGAGTTGCCATCCGGTTCAGAACGAGATATCTTC  984

Query  329   ATCGGGAAATCATTTGGATAAAACTATCAGGATTTGGAAACAGGATGCTTGA  380
             |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  985   ATCGGGTAATCATTTGGATAAAACTATCAGGATTTGGAAACAGGATGCTTGA  1036



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001209122


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5