BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943444

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02740.1 | Symbols:  | F-box/RNI-like superfamily protein | ...   388    2e-107


> AT4G02740.1 | Symbols:  | F-box/RNI-like superfamily protein 
| chr4:1217591-1220857 REVERSE LENGTH=1628
Length=1628

 Score =  388 bits (210),  Expect = 2e-107
 Identities = 294/332 (89%), Gaps = 16/332 (5%)
 Strand=Plus/Plus

Query  254   TAACCGCGGCTTAGCATCTTCAGACAGGGGCAAGAGATGTAACAAACCAAACTTTCCTCT  313
             |||| | || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1157  TAACAGTGGATTAGCTTCTTCAGACAGGGGCAAGAGATGTAACAAACCAAACTTTCCTCT  1216

Query  314   GGAGAGGCTGAAAGAAGAAAGATCAGATGTCACATTTGTGGCGGACTTTCCTCCATTGCC  373
             ||||||||||||||||||||||||||||||||||||||||||||| |||  |||||   |
Sbjct  1217  GGAGAGGCTGAAAGAAGAAAGATCAGATGTCACATTTGTGGCGGA-TTT--TCCATCAAC  1273

Query  374   TAGTTCCGAAAAGCCTTATGGTGTCTGCGATGAAGAAGAGTTGAGGCTGATAGAGATGAT  433
              ||||| | ||||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct  1274  AAGTTCAGGAAAGCGTTATGGTGTGTGCGATGAAGAAGAGCTGAGGCTGATAGAGATGAT  1333

Query  434   GGAAGCTGAGGACGATGAAGTGGACGACGAAGATGACTCGGATGAGGA-ATCGGACGATG  492
             ||||||||||||||||||||||||||| ||||||||||||||||| || | | |||||||
Sbjct  1334  GGAAGCTGAGGACGATGAAGTGGACGAAGAAGATGACTCGGATGACGACA-CTGACGATG  1392

Query  493   CATCGGATGAGGATGAGTCAGAAGATGA-G--GACATGGGC-T----TTA-ATGTCGATT  543
              ||||||||| |||||||||||| |||| |  ||||||||  |    ||  |||||||||
Sbjct  1393  TATCGGATGAAGATGAGTCAGAAAATGATGATGACATGGGAATGGGATTTGATGTCGATT  1452

Query  544   ATTTGTTATGATTAGTGTT-GGTAATCCGTTA  574
             ||||||| ||||||||||| ||||||| ||||
Sbjct  1453  ATTTGTTGTGATTAGTGTTTGGTAATC-GTTA  1483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27578546703


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5