BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943446
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02733.1 | Symbols: | F-box family protein | chr4:1210140-1... 599 1e-170
> AT4G02733.1 | Symbols: | F-box family protein | chr4:1210140-1211532
REVERSE LENGTH=959
Length=959
Score = 599 bits (324), Expect = 1e-170
Identities = 454/515 (88%), Gaps = 15/515 (3%)
Strand=Plus/Plus
Query 22 TGGATTCGATAATCTCCTCCTTGCTTACGTTTCCGGATTCTCCATCTCTGTCCATCAGAT 81
||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||| || |
Sbjct 88 TGGATTCAATAATCTCCTCCTTGGTTACATTTCCGGATTCTCCATCTCTCTCCATAAGCT 147
Query 82 CCTCATTCGATCGAGTACTTGATAATCTTCTCTCCTCTAGTGATGACTCCGTTCAAGATC 141
|||| |||||||||||||||||| |||||||||||||| |||||| |||||| ||||| |
Sbjct 148 CCTCTTTCGATCGAGTACTTGATCATCTTCTCTCCTCTGGTGATGTCTCCGTCCAAGACC 207
Query 142 AACTCATCGATCGTACTCTCGAACGCTTCTCGCTTCTTCTCGAATCCACCAAACGTCGCT 201
||||| | |||||||||||||| |||||||||||||||||| |||||||||||||| |||
Sbjct 208 AACTCGTAGATCGTACTCTCGAGCGCTTCTCGCTTCTTCTCCAATCCACCAAACGTTGCT 267
Query 202 TCCAGAAACGAGCCACACTCCACAATTCCATCTCCTGGTTCCTCCCTTCCGACCTCACCA 261
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 268 CCCAGAAACGAGCCACACTTCACAATTCCATCTCCTGGTTCCTCCCTTCGGAACTCACCG 327
Query 262 TCAAGATATTTTCGAAGCTTGATACAAAGTCCCTGATGCAAGTTTCTGCATGCTGCACAA 321
| ||| ||||||||| | |||||||||| ||||| ||||||| |||||||||||||||||
Sbjct 328 TTAAGGTATTTTCGATGGTTGATACAAAATCCCTAATGCAAGCTTCTGCATGCTGCACAA 387
Query 322 TGCTCAACAAGAGTGCCATGGACCCTTTATGTTACTCTCATATTGACTTGACAACAGCAT 381
|| |||| || |||||||||||||||||||||||| ||||||||| ||||||| |||||
Sbjct 388 TGTTCAATAATTGTGCCATGGACCCTTTATGTTACTTTCATATTGATTTGACAAAAGCAT 447
Query 382 TTCAACATGCTGATGACCGAGTTTTGAGTACTTTGATCAATCGTTCTGGAAAACAACTCA 441
|| |||||| ||||||||| |||||| |||||||| | ||||||||||||||||||||||
Sbjct 448 TTAAACATGTTGATGACCGCGTTTTGCGTACTTTGCTTAATCGTTCTGGAAAACAACTCA 507
Query 442 GATCCCTTAAACTTGGTCGTCGT-GATGCTCCCGGATACGTTCCATCTTTGTTTACAAAC 500
|||||||||||||||||||| || ||||||||||||| ||| | ||||| ||
Sbjct 508 GATCCCTTAAACTTGGTCGT-GTTGATGCTCCCGGAT--GTT---T----GTTTAGAAGT 557
Query 501 TCTTGTCTTGCTCCACTACA-A-TTTACTGGGAAT 533
||||||||| |||||||| | | |||| |||||||
Sbjct 558 TCTTGTCTTCCTCCACTA-ATACTTTA-TGGGAAT 590
Score = 372 bits (201), Expect = 3e-102
Identities = 284/323 (88%), Gaps = 10/323 (3%)
Strand=Plus/Plus
Query 441 AGATCCCTTAAACTTGGTCGTCGTGATGCTCCCGGATACGTTCCATCTTTGTTTACAA-A 499
||| ||||||||||| | |||||||| |||| || | | || |||||||||||||| |
Sbjct 600 AGAGCCCTTAAACTT-G--GTCGTGATCCTCCTGG-T-C-TTGGATCTTTGTTTACAAGA 653
Query 500 CTCTTGTCTTGCTCCACTACAATTTACTGGGAATCTTTTGAGAAGCCTACACATCTACTC 559
|||||| ||| ||||||| || |||| ||||||||||||| ||| |||||||| |||||
Sbjct 654 -TCTTGTTTTGATCCACTAAAACTTACCGGGAATCTTTTGACAAGTCTACACATTTACTC 712
Query 560 TATCGGATTCATGTACATTG-ATTCCTTATTGGCTCCATTATCAGCCTGCGCCAATCTAA 618
| | ||||||||| ||| || ||||||| |||| |||||| ||||||||| | |||||||
Sbjct 713 TCTTGGATTCATGAACA-TGAATTCCTTTTTGGATCCATTGTCAGCCTGCTCGAATCTAA 771
Query 619 CCGATTTGAAGATTGTTGGAGTGAATGtttttttAGAGCCGATAATAGAGTTACTTGCGA 678
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 772 CCGATTTGAAGATTGTTGGAGTGAATGTTTTGTTAGAGCCGATATTAGAGTTACTTGCGA 831
Query 679 TAAAATGTTGCTTGATAGAGCATCTATTCTTAGATAACTTTTCTCAAGGTAAAAATTTTA 738
||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 832 GAAACTGTTGCTTGATAGAGCATCTGTTCTTAGATAACTGTTCTCAAGGTAAAACTTTTA 891
Query 739 TATGGTGGGGCTTCCTTTATTTT 761
||||||||||||||||||||||
Sbjct 892 CATGGTGGGGCTTCCTTTATTTT 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40237551747
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5