BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943446 Length=826 Score E Sequences producing significant alignments: (Bits) Value AT4G02733.1 | Symbols: | F-box family protein | chr4:1210140-1... 599 1e-170 > AT4G02733.1 | Symbols: | F-box family protein | chr4:1210140-1211532 REVERSE LENGTH=959 Length=959 Score = 599 bits (324), Expect = 1e-170 Identities = 454/515 (88%), Gaps = 15/515 (3%) Strand=Plus/Plus Query 22 TGGATTCGATAATCTCCTCCTTGCTTACGTTTCCGGATTCTCCATCTCTGTCCATCAGAT 81 ||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||| || | Sbjct 88 TGGATTCAATAATCTCCTCCTTGGTTACATTTCCGGATTCTCCATCTCTCTCCATAAGCT 147 Query 82 CCTCATTCGATCGAGTACTTGATAATCTTCTCTCCTCTAGTGATGACTCCGTTCAAGATC 141 |||| |||||||||||||||||| |||||||||||||| |||||| |||||| ||||| | Sbjct 148 CCTCTTTCGATCGAGTACTTGATCATCTTCTCTCCTCTGGTGATGTCTCCGTCCAAGACC 207 Query 142 AACTCATCGATCGTACTCTCGAACGCTTCTCGCTTCTTCTCGAATCCACCAAACGTCGCT 201 ||||| | |||||||||||||| |||||||||||||||||| |||||||||||||| ||| Sbjct 208 AACTCGTAGATCGTACTCTCGAGCGCTTCTCGCTTCTTCTCCAATCCACCAAACGTTGCT 267 Query 202 TCCAGAAACGAGCCACACTCCACAATTCCATCTCCTGGTTCCTCCCTTCCGACCTCACCA 261 |||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| Sbjct 268 CCCAGAAACGAGCCACACTTCACAATTCCATCTCCTGGTTCCTCCCTTCGGAACTCACCG 327 Query 262 TCAAGATATTTTCGAAGCTTGATACAAAGTCCCTGATGCAAGTTTCTGCATGCTGCACAA 321 | ||| ||||||||| | |||||||||| ||||| ||||||| ||||||||||||||||| Sbjct 328 TTAAGGTATTTTCGATGGTTGATACAAAATCCCTAATGCAAGCTTCTGCATGCTGCACAA 387 Query 322 TGCTCAACAAGAGTGCCATGGACCCTTTATGTTACTCTCATATTGACTTGACAACAGCAT 381 || |||| || |||||||||||||||||||||||| ||||||||| ||||||| ||||| Sbjct 388 TGTTCAATAATTGTGCCATGGACCCTTTATGTTACTTTCATATTGATTTGACAAAAGCAT 447 Query 382 TTCAACATGCTGATGACCGAGTTTTGAGTACTTTGATCAATCGTTCTGGAAAACAACTCA 441 || |||||| ||||||||| |||||| |||||||| | |||||||||||||||||||||| Sbjct 448 TTAAACATGTTGATGACCGCGTTTTGCGTACTTTGCTTAATCGTTCTGGAAAACAACTCA 507 Query 442 GATCCCTTAAACTTGGTCGTCGT-GATGCTCCCGGATACGTTCCATCTTTGTTTACAAAC 500 |||||||||||||||||||| || ||||||||||||| ||| | ||||| || Sbjct 508 GATCCCTTAAACTTGGTCGT-GTTGATGCTCCCGGAT--GTT---T----GTTTAGAAGT 557 Query 501 TCTTGTCTTGCTCCACTACA-A-TTTACTGGGAAT 533 ||||||||| |||||||| | | |||| ||||||| Sbjct 558 TCTTGTCTTCCTCCACTA-ATACTTTA-TGGGAAT 590 Score = 372 bits (201), Expect = 3e-102 Identities = 284/323 (88%), Gaps = 10/323 (3%) Strand=Plus/Plus Query 441 AGATCCCTTAAACTTGGTCGTCGTGATGCTCCCGGATACGTTCCATCTTTGTTTACAA-A 499 ||| ||||||||||| | |||||||| |||| || | | || |||||||||||||| | Sbjct 600 AGAGCCCTTAAACTT-G--GTCGTGATCCTCCTGG-T-C-TTGGATCTTTGTTTACAAGA 653 Query 500 CTCTTGTCTTGCTCCACTACAATTTACTGGGAATCTTTTGAGAAGCCTACACATCTACTC 559 |||||| ||| ||||||| || |||| ||||||||||||| ||| |||||||| ||||| Sbjct 654 -TCTTGTTTTGATCCACTAAAACTTACCGGGAATCTTTTGACAAGTCTACACATTTACTC 712 Query 560 TATCGGATTCATGTACATTG-ATTCCTTATTGGCTCCATTATCAGCCTGCGCCAATCTAA 618 | | ||||||||| ||| || ||||||| |||| |||||| ||||||||| | ||||||| Sbjct 713 TCTTGGATTCATGAACA-TGAATTCCTTTTTGGATCCATTGTCAGCCTGCTCGAATCTAA 771 Query 619 CCGATTTGAAGATTGTTGGAGTGAATGtttttttAGAGCCGATAATAGAGTTACTTGCGA 678 ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 772 CCGATTTGAAGATTGTTGGAGTGAATGTTTTGTTAGAGCCGATATTAGAGTTACTTGCGA 831 Query 679 TAAAATGTTGCTTGATAGAGCATCTATTCTTAGATAACTTTTCTCAAGGTAAAAATTTTA 738 ||| |||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| Sbjct 832 GAAACTGTTGCTTGATAGAGCATCTGTTCTTAGATAACTGTTCTCAAGGTAAAACTTTTA 891 Query 739 TATGGTGGGGCTTCCTTTATTTT 761 |||||||||||||||||||||| Sbjct 892 CATGGTGGGGCTTCCTTTATTTT 914 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40237551747 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5