BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943448
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02730.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1533 0.0
> AT4G02730.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:1207725-1209287 FORWARD LENGTH=1257
Length=1257
Score = 1533 bits (830), Expect = 0.0
Identities = 911/951 (96%), Gaps = 2/951 (0%)
Strand=Plus/Plus
Query 55 CCGGTAACGCGGGAACAAGCGGAAACATTCCGATGTATAAGCCATACCGTCACCTGAAAA 114
|||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 87 CCGGTAACGCAGGAACAAGCGGAAACGTTCCGATATATAAGCCATACCGTCACCTGAAAA 146
Query 115 CCCTAGAAGGTCACACGGCGGCGATCTCTTGCGTCAAATTCTCCAACGACGGCAATCTTC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 CCCTAGAAGGTCACACGGCGGCGATCTCTTGCGTCAAATTCTCCAACGACGGCAATCTTC 206
Query 175 TGGCTTCCGCTTCCGTCGACAAAACCATGATTCTCTGGTCAGCTACGAACTACTCTCTTA 234
| |||||||||||||| |||||||||||||| ||||||||||| || ||||||||||| |
Sbjct 207 TCGCTTCCGCTTCCGTAGACAAAACCATGATCCTCTGGTCAGCAACAAACTACTCTCTCA 266
Query 235 TTCATCGTTACGAAGGTCACTCTATTGGTATCTCCGATCTAGCTTGGTCTTCTGATTCGC 294
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 267 TTCATCGTTACGAAGGTCACTCTAGTGGTATCTCCGATCTAGCTTGGTCTTCTGATTCGC 326
Query 295 ATTACACTTGCTCTGCTTCTGATGATTGTACGCTTCGAATCTGGGACGCTAGATCTCCTT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 ATTACACTTGCTCTGCTTCTGATGATTGTACGCTTCGAATCTGGGACGCTAGATCTCCTT 386
Query 355 ACGAGTGTCTTAAGGTTCTTAGAGGTCATACGAATTTCGTGTTCTGTGTTAATTTCAATC 414
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 387 ATGAATGTCTTAAGGTTCTTAGAGGTCATACGAATTTCGTCTTCTGTGTTAATTTCAATC 446
Query 415 CTCCGTCGAATTTGATTGTGTCTGGATCGTTTGATGAGACGATTCGGATTTGGGAGGTTA 474
|||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 447 CTCCTTCGAATTTGATTGTGTCTGGATCGTTCGATGAGACGATTCGTATTTGGGAGGTTA 506
Query 475 AGACTGGGAAATGTGTTAGGATGATTAAAGCTCATTCGATGCCGATTTCGAGTGTGCATT 534
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 AGACTGGGAAGTGTGTTAGGATGATTAAAGCTCATTCGATGCCGATTTCGAGTGTGCATT 566
Query 535 TTAATCGAGATGGATCGTTGATTGTTTCGGGAAGTCATGATGGTTCTTGTAAAATTTGGG 594
||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 567 TTAATAGAGATGGATCGTTGATTGTTTCGGCAAGTCATGATGGTTCTTGTAAGATTTGGG 626
Query 595 ATGCTAAGGAAGGAACTTGCTTGAAGACTCTTATTGATGATAAATCTCCGGCTGTTTCTT 654
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 ATGCTAAAGAAGGAACTTGCTTGAAGACTCTTATTGATGATAAATCTCCGGCTGTTTCTT 686
Query 655 TCGCCAAATTCTCGCCTAACGGGAAGTTTATACTCGTTGCTACGCTCGATAGTACTCTCA 714
|||| || |||||||| || || |||||||||||||||||||| ||||||||||||||||
Sbjct 687 TCGCTAAGTTCTCGCCCAATGGCAAGTTTATACTCGTTGCTACTCTCGATAGTACTCTCA 746
Query 715 AGCTGTCCAACTATGCAACGGGGAAGTTTCTGAAAGTGTACACAGGACATACCAACAAAG 774
||||||| |||||||| |||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 747 AGCTGTCGAACTATGCGACGGGGAAGTTTTTGAAAGTGTATACAGGACATACTAACAAAG 806
Query 775 TGTTCTGTATCACATCGGCGTTTTCTGTAACGAATGGGAAGTACATTGTGAGTGGATCAG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 TGTTCTGTATCACATCGGCGTTTTCTGTAACGAATGGGAAGTACATTGTGAGTGGATCAG 866
Query 835 AGGACAATTGTGTGTATCTGTGGGATCTTCAA-CAGAAAAATATACTGCAGAGATTGGAA 893
|||| ||||||||||||||||||||||||||| | || |||||||||||||||| | |||
Sbjct 867 AGGATAATTGTGTGTATCTGTGGGATCTTCAAGC-GAGAAATATACTGCAGAGACTAGAA 925
Query 894 GGCCACACAGACGCAGTGATCTCAGTGAGTTGCCATCCGGTTCAGAACGAGATAGCTTCA 953
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 926 GGCCACACAGACGCAGTGATCTCAGTGAGTTGCCATCCGGTTCAGAACGAGATATCTTCA 985
Query 954 TCGGGAAATCATTTGGATAAAACTATCAGGATTTGGAAACAGGATGCTTGA 1004
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 TCGGGTAATCATTTGGATAAAACTATCAGGATTTGGAAACAGGATGCTTGA 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50234147000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5