BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943453
Length=658
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02715.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1002 0.0
> AT4G02715.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:1202170-1203380
REVERSE LENGTH=1076
Length=1076
Score = 1002 bits (542), Expect = 0.0
Identities = 607/639 (95%), Gaps = 1/639 (0%)
Strand=Plus/Plus
Query 1 TACTGTTGACAG-ATCTCGAAATGGAAACGCTTATTGTAGCTGTGGAACATAAGGATCAA 59
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 438 TACTGTTGACAGTATCTCGAAATGGAAACGCTTATTGTAGCTGTGGAACATAGGGATCAA 497
Query 60 TATTATGGGAAGAAATCTCTTGGACATGATCGTTTTAGATCAGCTCCTTCCAAAAATTTT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 498 TATTATGGGAAGAAATCTCTTGGACATGATCGTTTTAGATCAGCTCCTTCCAAAACTTTT 557
Query 120 AGGCAAATCAATTGCAGAACTTTTCAATCTGGTGTGGGTTTGCTTCCGAGACCTAAGAGA 179
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 558 AGGCAGATCAATTGCAGAACTTTTCAATCTGGTGTGGGTTTGCTTCCAAGACCTAAGAGA 617
Query 180 ACGTCTTCAACACCTTTAACCAAAGGAGCTCTTCCTCAAGTTCAGTCTCCGCGTTCTCCT 239
|| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 618 ACTTCTTCAACACCTTTAACCAAAGGAGCTCTTTCTCAAGTTCAGTCTCCTCGTTCTCCT 677
Query 240 AAGTCCGTTTTGCCGGTTTTTAATCCTCTTTCGGTAGACAGCGCTAGAACCAGTCCCATT 299
||||||||||| ||||||||| ||| || || || ||||| | ||||||||||||||||
Sbjct 678 AAGTCCGTTTTACCGGTTTTTCATCATCCATCTGTTGACAGTGGTAGAACCAGTCCCATT 737
Query 300 CCAATTGCTAACAGCAGAGCTTCTCAGATCCGTAGGTGTTCTAGTGAATTTGTTGACAAA 359
||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 738 CCAATTGCTAATTGCAGAGGTTCTCAGATCCGTAGGTGTTCTAGTGAGTTTGTTGACAAA 797
Query 360 AGGAGAAGCCTTTCTTACTCTGAGCTATGGGCAGGACCTACTTACTCCAACTCGCCTCCA 419
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 798 AGGAGAAGCCTTTCTTATTCTGAGCTATGGGCAGGACCTACTTACTCTAACTCACCTCCA 857
Query 420 CCTGCTTCTGTGCCGATTCCTAAGTTTTCTCTCCACCAAAAGAGGACGGTATCTTTGACC 479
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 858 CCTGCTTCTGTGCCGATTCCTAAGTTTTCTCTCCAGCAAAAGAGGACGGTATCTTTGACC 917
Query 480 TTTCCTGCTCATGACTCTGCTGTTGATATTCGTGAAGTTGCTAAGTCTGCGCCGGTTTCT 539
|||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 918 TTTCCTGCTCCTGACTCTGCTGTTGATATTCGTGAAGTTGCTAAGTCTGCACCAGTTTCT 977
Query 540 CCAACCTCATCTGGTGACAACCCTTTTCATTGTACTGTCTCTGCCACTATGACACTGCGT 599
|||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||
Sbjct 978 CCAACCTCATCTGGTGACAATCCTTTTCGTAGTACTGTCTCTGCCACTATGACACTGCGT 1037
Query 600 CGCATGCTCAATCTTGAGCTTGAGACTGCCGATGAATGA 638
||||||||||||||||||||||||||||| |||||||||
Sbjct 1038 CGCATGCTCAATCTTGAGCTTGAGACTGCAGATGAATGA 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31798215051
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5