BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943455
Length=1983
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02700.1 | Symbols: SULTR3;2 | sulfate transporter 3;2 | chr... 3157 0.0
> AT4G02700.1 | Symbols: SULTR3;2 | sulfate transporter 3;2 | chr4:1188983-1193611
FORWARD LENGTH=2306
Length=2306
Score = 3157 bits (1709), Expect = 0.0
Identities = 1891/1981 (95%), Gaps = 3/1981 (0%)
Strand=Plus/Plus
Query 1 TTAAATAGTTAAACTAGAAGATGAGCAGCAAAAGGTCATCACAATATCACCAAGTAGAAA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 TTAAATAGTTAAACTAGAAGATGAGCAGCAAAAGGGCATCACAATATCACCAAGTAGAAA 119
Query 61 TCCCTCCACCACAACCTTTCTTGAAATCACTAAAGAACACTCTCAATGATATCCTTTTCG 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 TCCCTCCACCACAACCTTTCTTGAAATCACTAAAGAACACTCTCAATGAGATCCTTTTCG 179
Query 121 CCGACGATCCGTTCCGTAGAATCAGGAACGAATCGAAAACGTCGAAAAAGATCGAGTTAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCGACGATCCGTTCCGTAGAATCAGGAACGAATCGAAAACGTCGAAAAAGATCGAGTTAG 239
Query 181 GGTTGCGACACGTGTTCCCAATCTTGGAATGGGCTCGTGGTTACAATTTGGAGTATTTTA 240
||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
Sbjct 240 GGTTGAGACACGTGTTCCCTATCTTGGAATGGGCTCGTGGTTACAGTTTGGAGTATTTGA 299
Query 241 AATCCGACGTTATCTCAGGGATAACAATTGCAAGTCTTGCTATTCCTCAAGGGATTAGCT 300
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AATCAGATGTTATCTCAGGGATAACAATTGCAAGTCTTGCTATTCCTCAAGGGATTAGCT 359
Query 301 ATGCTCAGCTCGCTAATCTCCCTCCAATCCTTGGTCTTTACTCGAGCTTGGTGCCGCCAT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 ATGCTCAGCTCGCTAATCTCCCTCCAATCCTTGGTCTTTACTCGAGCTTGGTGCCGCCGT 419
Query 361 TGGTATACGCGGTAATGGGAAGTTCAAGAGATTTAGCGGTGGGAACAGTGGCGGTGGCCT 420
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGGTATACGCGATCATGGGAAGTTCAAGAGATTTAGCGGTGGGAACAGTGGCGGTGGCCT 479
Query 421 CGCTGTTGACGGCGGCGATGTTGGGGAAAGAGGTAAACGCAGTGAAGAATCCAAAGCTTT 480
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 CGCTGTTGACGGCTGCGATGTTGGGGAAAGAGGTAAACGCAGTGGTGAATCCAAAGCTTT 539
Query 481 ACCTTCACTTAGCTTTCACCGCCACTTTCTTCGCCGGACTCATGCAAACCTGTCTTGGCC 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 ACCTTCACTTAGCTTTCACCGCCACTTTCTTCGCCGGACTCATGCAAACCTGCCTTGGCC 599
Query 541 TCTTACGGTTAGGGTTCGTGGTGGAGATATTGTCGCACGCGGCGATTGTAGGGTTCATGG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCTTACGGTTAGGGTTCGTGGTGGAGATATTGTCGCACGCGGCGATTGTAGGGTTCATGG 659
Query 601 GAGGAGCTGCGACGGTGGTGTGTCTGCAGCAACTGAAAGGATTACTTGGCCTCCATCACT 660
||||||| || || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 GAGGAGCCGCAACAGTGGTGTGTCTGCAGCAACTGAAAGGATTACTTGGCCTCCATCATT 719
Query 661 TCACTCATTCCACCGATATCGTCTCTGTTCTCCGCTCCATTTTTTCTCAATCTCATATGT 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 720 TCACTCATTCCACCGATATCGTCACTGTTCTCCGCTCCATTTTTTCTCAATCTCATATGT 779
Query 721 GGAGATGGGAGAGTGGAGTGCTAGGGTGTTGCTTCCTCGTCTTCCTTCTTACAACTAAAT 780
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 780 GGAGATGGGAAAGTGGAGTGCTAGGGTGTTGCTTCCTAATCTTCCTTCTTACAACTAAAT 839
Query 781 ACATTAGCAAGAAGAGACCAAAGCTGTTCTGGATATCTGCAATGTCTCCACTTGTTTCTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACATTAGCAAGAAGAGACCAAAGCTGTTCTGGATATCTGCAATGTCTCCACTTGTTTCTG 899
Query 841 TCATTCTTGGGACCCTTTTCCTTTACTTCCTTCATGCCCATTTCCATGACATCCAAATTA 900
||||| |||| ||| |||||||||||||||| |||| ||| ||||||| |||||| |||
Sbjct 900 TCATTTTTGGAACCATTTTCCTTTACTTCCTCCATGACCAATTCCATGGTATCCAATTTA 959
Query 901 TCGGGGAACTAAAGAAAGGGATTAATCCACCGTCAATCACACATTTAGTATTCACGTCAC 960
|||| ||||||||||||||||| ||||||||||||||||||||||| || |||||| |||
Sbjct 960 TCGGAGAACTAAAGAAAGGGATAAATCCACCGTCAATCACACATTTGGTTTTCACGCCAC 1019
Query 961 CTTATGTTATGTTGGCTCTCAAAATCGGCATGATCACCGGAGTCATAGCTCTCGCTGAAG 1020
||||||| ||||||||||||||| | ||||| ||||| ||||||||||||||||||||||
Sbjct 1020 CTTATGTCATGTTGGCTCTCAAAGTTGGCATTATCACTGGAGTCATAGCTCTCGCTGAAG 1079
Query 1021 GGATTGCAGTGGGGAGAAGCTTTGCAATGTACAAGAATTACAACATAGATGGGAACAAAG 1080
| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1080 GTATAGCAGTGGGGAGAAGCTTTGCAATGTACAAGAATTACAATATAGATGGGAACAAAG 1139
Query 1081 AGATGATAGCCTTTGGAATGATGAACATTCTTGGTTCCTTCTCCTCTTGCTATCTCACTA 1140
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGATGATAGCCTTTGGGATGATGAACATTCTTGGTTCCTTCTCCTCTTGCTATCTCACTA 1199
Query 1141 CCGGGCCGTTTTCACGTTCGGCGGTGAACTACAACGCGGGTTGCAAAACAGCGTTATCAA 1200
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1200 CCGGGCCATTTTCACGTTCGGCGGTGAACTACAACGCGGGTTGCAAAACGGCGTTATCAA 1259
Query 1201 ACGTGGTAATGGCGGTTGCAGTGGCGGTGACGTTACTGTTCTTAACGCCGTTATTCTTCT 1260
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ACGTGGTGATGGCGGTTGCAGTGGCGGTGACGTTACTGTTCTTAACGCCGTTATTCTTCT 1319
Query 1261 ACACGCCATTAGTTGTTCTTTCGTCGATCATAATCACCGCCATGCTCGGCCTGGTCGACT 1320
||||||||||||| ||||| ||||||||||||||| | |||||||| ||||| |||||||
Sbjct 1320 ACACGCCATTAGTAGTTCTGTCGTCGATCATAATCGCTGCCATGCTAGGCCTAGTCGACT 1379
Query 1321 ACGAAGCAGCCATTCATCTTTGGAGACTTGACAAGTTCGATTTCTTCGTTTGTCTCTCTG 1380
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1380 ACGAAGCAGCCATTCATCTTTGGAAACTCGACAAGTTCGATTTCTTCGTTTGTCTCTCTG 1439
Query 1381 CTTACTTAGGCGTCGTTTTTGGTACCATCGAGATTGGTCTCATCCTCTCCGTGGGAGTAT 1440
||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1440 CTTACTTGGGCGTTGTTTTTGGTACCATCGAAATTGGTCTCATCCTCTCCGTGGGAATAT 1499
Query 1441 CAGTGATGAGGTTAGTGTTGTTCGTTGGAAGACCAAAGATTTATGTAATGGGAAACATTC 1500
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1500 CAGTGATGAGGTTAGTGTTGTTCGTGGGAAGACCAAAGATTTATGTAATGGGAAACATTC 1559
Query 1501 AAAACACAGAAATATTTAGGAACATTGAACATTACCCTCAAGCCATCACTCTCTCTTCTC 1560
||||| ||||||||| |||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1560 AAAACTCAGAAATATATAGGAACATTGAGCATTACCCTCAAGCCATCACTCGCTCTTCTC 1619
Query 1561 TCCTCATTCTCCACATCGATGGCCCTATTTACTTCGCCAACTCTAGCTACTTGCGAGACA 1620
| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1620 TTCTCATTCTCCACATCGATGGTCCTATTTACTTCGCCAACTCTACCTACTTGCGAGACA 1679
Query 1621 GAATTGGAAGGTGGATTGATGAAGAGGAAGATAAATTGAGAACTAGCGGAGAAATCAATC 1680
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1680 GAATTGGAAGGTGGATCGATGAAGAGGAAGATAAATTGAGAACTAGCGGAGATATCAGTC 1739
Query 1681 TACAATACATTGTTCTCGATATGAGTGCCGTGGGGAACATTGACACGAGCGGTATAAGCA 1740
||||||| ||||| ||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 1740 TACAATATATTGTACTCGACATGAGTGCTGTGGGGAACATCGACACGAGCGGTATAAGCA 1799
Query 1741 TGCTTGAGGAACTCAACAAATTCATGGGACGAAGAGAGCTTAAGCTAGTGATAGCGAACC 1800
|||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 1800 TGCTTGAGGAACTCAACAAAATCCTGGGACGTAGAGAGCTTAAGCTAGTGATAGCGAACC 1859
Query 1801 CAGGAGCAGAGGTGATGAAGAAGCTAAGCAAGTCCAACTTCATAGAGAGCATTGGTAAAG 1860
| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1860 CGGGAGCAGAGGTGATGAAGAAGCTAAGCAAGTCCACCTTCATTGAGAGCATTGGTAAAG 1919
Query 1861 AACGGATTTATCTCACGGTGGCAGAAGCCGTCGCGGCGTGCGATTTCATGCTCCACACGG 1920
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1920 AACGGATTTATCTCACGGTGGCAGAAGCCGTCGCAGCTTGCGATTTCATGCTCCACACGG 1979
Query 1921 CTAAACCCGACTCGCCGGTACCGGAATCTAACAACGTTTAAGATTTCTTCACATTGAAAA 1980
||||||||||||||||||||||||||| ||||||||||||||||||| | | |||||||
Sbjct 1980 CTAAACCCGACTCGCCGGTACCGGAATTTAACAACGTTTAAGATTTCAT-A--TTGAAAA 2036
Query 1981 T 1981
|
Sbjct 2037 T 2037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98242466565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5