BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943458

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G66510.2 | Symbols: GAMMA CA3 | gamma carbonic anhydrase 3 |...   198    1e-50


> AT5G66510.2 | Symbols: GAMMA CA3 | gamma carbonic anhydrase 3 
| chr5:26549704-26551604 REVERSE LENGTH=1230
Length=1230

 Score =  198 bits (107),  Expect = 1e-50
 Identities = 127/137 (93%), Gaps = 0/137 (0%)
 Strand=Plus/Plus

Query  1    GTGGGgaagaagaagaagaagaCGATGGGAACAATGAGAAAAGCATTGTACAACGTAGGA  60
            ||| |||||||||||||||| ||||||||||||||| | |||||||| |||| |||||||
Sbjct  85   GTGTGGAAGAAGAAGAAGAACACGATGGGAACAATGGGTAAAGCATTCTACAGCGTAGGA  144

Query  61   TTCTGGATCCGGGAAACTGGTCAAGCACTTGATCGGCTCGGTTGTCGCCTCCAAGGCAAA  120
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  145  TTCTGGATCCGTGAAACTGGTCAAGCACTTGATCGGCTCGGTTGTCGCCTCCAAGGGAAA  204

Query  121  AAACACTTCCGAGAACA  137
            || || |||||||||||
Sbjct  205  AATCATTTCCGAGAACA  221



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9054243180


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5