BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943461
Length=403
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02655.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 542 1e-153
AT1G18486.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 411 3e-114
AT1G18490.1 | Symbols: | Protein of unknown function (DUF1637)... 316 8e-86
> AT4G02655.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G18486.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:1158848-1159422 FORWARD LENGTH=575
Length=575
Score = 542 bits (293), Expect = 1e-153
Identities = 368/403 (91%), Gaps = 9/403 (2%)
Strand=Plus/Plus
Query 1 AACAAGAGAAGCCTAAAGCAATGAAGACTTCCATGGGCATCCTCGTCGTAGTCTTCTTTG 60
|||||| |||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 9 AACAAGCGAAGCCAAAAGCAATGAAGACTTCCATGAGCATCGTCGCCGTAGTCTTCTTTG 68
Query 61 CGACCTTCCTCGCTATCTCTGCTGCTCCTCCCTTAAACCCCCAGGAATCTTGCATACGAA 120
||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||
Sbjct 69 TGACCTTCCTCGCTATCTCTGCTG---CTCCCTTAAACCCCCAAGAAGCTTGCATACGAA 125
Query 121 GAAACATCAACAGGTCACAACCACCAAG--C-TCTTCACTCG-AAC--ACAAGACGTCAA 174
|||| ||||||||||| ||||||||||| | |||||||||| ||| |||||||||||
Sbjct 126 GAAATATCAACAGGTCGCAACCACCAAGATCTTCTTCACTCGAAACGGCCAAGACGTCAA 185
Query 175 TCTTCGACTCTCTTAGGGACAATTTGTGCAGAGACATGGCTCGTGCCGTCATGTTCTATG 234
| || || ||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 186 TGTTTGAATCTCTGAGGGACAATTTGTGCAAAGACATGGCTCGTGCCGTCATGTTCTATG 245
Query 235 TGAGGATAACCGGAAAGTTTCCAGCTCACTATGTTAAGGCGATGTGTAATGTGTTTGGAA 294
|||||||||||||||| |||||| || ||||||||||||| |||||||||||||||||||
Sbjct 246 TGAGGATAACCGGAAAATTTCCATCTAACTATGTTAAGGCTATGTGTAATGTGTTTGGAA 305
Query 295 ATGATGAGAAGAAAGTGAAAGAGTATGTTATGGATAAATGGTTGGGAGGTTCGAAACTCC 354
||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||
Sbjct 306 ATGATGAGAAGAAAGTGAAGGAGTATGTTCTGGAGAAATGGTTGGGAGGTTCGAAGCTCC 365
Query 355 TGTCTAATGTATCTTGTGCTTTTCATTGATTTGTTCTGTGATT 397
|||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 366 TGTCTAATGTATCTTGTGCTTTTCATTGATATGTTCCGTGATT 408
> AT1G18486.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G02655.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:6366397-6366753 FORWARD LENGTH=357
Length=357
Score = 411 bits (222), Expect = 3e-114
Identities = 318/364 (87%), Gaps = 8/364 (2%)
Strand=Plus/Plus
Query 21 ATGAAGACTTCCATGGGCATCCTCGTCGTAGTCTTCTTTGCGACCTTCCTCGCTATCTCT 80
||||||| ||| ||| ||||| | ||| | |||| |||| |||| || || | ||||||
Sbjct 1 ATGAAGAGTTCAATGAGCATCATTGTC-T--TCTTGTTTGTGACCATCTTCACCATCTCT 57
Query 81 GCTGCTCCTCCCTTAAACCCCCAGGAATCTTGCATACGAAGAAACATCAACAGGTCACAA 140
||| | || |||| ||||| ||||| ||||||||| ||||||||||||| ||||||||
Sbjct 58 GCT--T-CTTCCTTGAACCCTGAGGAAACTTGCATACAAAGAAACATCAACCGGTCACAA 114
Query 141 CCACCAAGCTCTTCACTCGAACACAAGACGTCAATCTTCGACTCTCTTAG-GGACAATTT 199
|| ||||||||||||||||||| |||||| |||| ||||||| |||| | |||||| ||
Sbjct 115 CCTCCAAGCTCTTCACTCGAACCCAAGACATCAAAGTTCGACTTTCTT-GTGGACAAGTT 173
Query 200 GTGCAGAGACATGGCTCGTGCCGTCATGTTCTATGTGAGGATAACCGGAAAGTTTCCAGC 259
|||||||||||||||||||||||||||||||| |||||||||||||||||| || ||| |
Sbjct 174 GTGCAGAGACATGGCTCGTGCCGTCATGTTCTCTGTGAGGATAACCGGAAAATTCCCATC 233
Query 260 TCACTATGTTAAGGCGATGTGTAATGTGTTTGGAAATGATGAGAAGAAAGTGAAAGAGTA 319
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 234 TCACTATGTGAAGGCGATGTGTAATGTGTTTGGAAATGACGAGAAGAAAGTGAAAGAGTA 293
Query 320 TGTTATGGATAAATGGTTGGGAGGTTCGAAACTCCTGTCTAATGTATCTTGTGCTTTTCA 379
|||| || | |||||||||||||||||||| ||| |||||| | ||||||||||||||||
Sbjct 294 TGTTGTGAAGAAATGGTTGGGAGGTTCGAAGCTCGTGTCTAGTTTATCTTGTGCTTTTCA 353
Query 380 TTGA 383
||||
Sbjct 354 TTGA 357
> AT1G18490.1 | Symbols: | Protein of unknown function (DUF1637)
| chr1:6366520-6368849 FORWARD LENGTH=1654
Length=1654
Score = 316 bits (171), Expect = 8e-86
Identities = 214/235 (91%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 150 TCTTCACTCGAACACAAGACGTCAATCTTCGACTCTCTTAG-GGACAATTTGTGCAGAGA 208
||||||||||||| |||||| |||| ||||||| |||| | |||||| |||||||||||
Sbjct 1 TCTTCACTCGAACCCAAGACATCAAAGTTCGACTTTCTT-GTGGACAAGTTGTGCAGAGA 59
Query 209 CATGGCTCGTGCCGTCATGTTCTATGTGAGGATAACCGGAAAGTTTCCAGCTCACTATGT 268
||||||||||||||||||||||| |||||||||||||||||| || ||| ||||||||||
Sbjct 60 CATGGCTCGTGCCGTCATGTTCTCTGTGAGGATAACCGGAAAATTCCCATCTCACTATGT 119
Query 269 TAAGGCGATGTGTAATGTGTTTGGAAATGATGAGAAGAAAGTGAAAGAGTATGTTATGGA 328
||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
Sbjct 120 GAAGGCGATGTGTAATGTGTTTGGAAATGACGAGAAGAAAGTGAAAGAGTATGTTGTGAA 179
Query 329 TAAATGGTTGGGAGGTTCGAAACTCCTGTCTAATGTATCTTGTGCTTTTCATTGA 383
|||||||||||||||||||| ||| |||||| | ||||||||||||||||||||
Sbjct 180 GAAATGGTTGGGAGGTTCGAAGCTCGTGTCTAGTTTATCTTGTGCTTTTCATTGA 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19051476871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5