BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943466
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02610.1 | Symbols: | Aldolase-type TIM barrel family prote... 1303 0.0
> AT4G02610.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr4:1147634-1149336 FORWARD LENGTH=975
Length=975
Score = 1303 bits (705), Expect = 0.0
Identities = 816/870 (94%), Gaps = 6/870 (1%)
Strand=Plus/Plus
Query 5 TCTTTGAAAGCTTGAAATGGAGGATCTTCTCAAGAATCCTCCCGCCACGGTTGGTCTATC 64
|||| ||| ||||| ||| |||||||||||||| |||| || ||||||||||||||||
Sbjct 13 TCTTCGAACGCTTGCAAT---GGATCTTCTCAAGACTCCTTCCTCCACGGTTGGTCTATC 69
Query 65 AGAAACTTTCGCTAAGTTAAAATCACAAGGCAAAGTGGCTCTGATTCCATATATCACAGC 124
|||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 70 AGAAACATTCGCTAGGTTAAAGTCACAAGGCAAAGTGGCTCTGATTCCATATATCACAGC 129
Query 125 TGGTGATCCTGATCTTTCTACTACAGCAAAAGCTCTCAAAGTGCTTGATTCGTGTGGTTC 184
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| ||
Sbjct 130 TGGTGATCCTGATCTTTCTACAACAGCGAAAGCTCTTAAAGTGCTTGATTCGTGTGGCTC 189
Query 185 CGACATAATCGAACTCGGTGTTCCATACTCTGATCCATTAGCTGATGGTCCAGCAATCCA 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CGACATAATCGAACTCGGTGTTCCATACTCTGATCCATTAGCTGATGGTCCAGCAATCCA 249
Query 245 GGCTGCTGCGAGACGTTCCTTACTTAAAGGAACCAACTTTAACTCCATTATCACTATGCT 304
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 250 GGCTGCTGCGAGACGTTCGTTACTTAAAGGAACCAACTTTAACTCCATTATCTCTATGCT 309
Query 305 CAAAGAGGTTATTCCTCAGTTATCTTGTCCAATTGCATTGTTTACGTATTACAATCCGAT 364
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 310 TAAAGAGGTTATTCCTCAGTTATCTTGTCCAATTGCATTGTTTACATATTACAATCCAAT 369
Query 365 CCTGCGGCGAGGAATCGACAACTATATGACTGTTATTAAGAATGCTGGAGTCCATGGCCT 424
|||||| |||||| | || ||||| ||||||||||| |||||||||||||| ||||| ||
Sbjct 370 CCTGCGACGAGGAGTAGAGAACTACATGACTGTTATAAAGAATGCTGGAGTTCATGGGCT 429
Query 425 TCTTGTTCCTGATGTTCCACTCGAGGAAACTGAGGCTCTGCGGAACGAAGCTCGGAAGCA 484
||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 430 TCTGGTTCCTGATGTTCCACTCGAGGAGACTGAAACTCTGCGGAACGAAGCTCGGAAGCA 489
Query 485 TCGGATTGAACTCGTACTGCTCACAACACCCACAACCCCGAAAGAACGAATGAACGCCAT 544
|| ||||| || ||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 490 TCAAATTGAGCTAGTACTGCTCACAACACCCACAACTCCAAAAGAACGAATGAATGCCAT 549
Query 545 TGTTGAAGCATCTGAAGGATTCATCTATCTCGTAAGTTCAGTAGGGGTTACTGGTACAAG 604
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 550 TGTTGAAGCCTCTGAAGGATTTATCTATCTCGTAAGTTCAGTAGGGGTTACTGGTACAAG 609
Query 605 AGAGTCTGTTAACGAAAAAGTTCAATCTCTTTTACAACAAATCAAAGAGGCAACAAGCAA 664
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 610 AGAGTCTGTTAACGAAAAAGTTCAATCTCTTCTACAACAAATCAAAGAGGCAACTAGCAA 669
Query 665 GCCAGTGGCCGTTGGATTTGGCATATCAAAACCTGAGCATGTGAAACAGGTAGCTGAATG 724
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GCCAGTGGCAGTTGGATTTGGCATATCAAAACCTGAGCATGTGAAACAGGTAGCTGAATG 729
Query 725 GGGAGCAGATGGAGTCATTGTTGGTAGTGCGATGGTTAAGATCTTGGGCGAGTCTGAATC 784
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 730 GGGAGCAGACGGAGTCATTGTTGGTAGCGCGATGGTTAAGATCTTGGGCGAGTCTGAATC 789
Query 785 ACCTGTGCAAGGACTTGAGGAGCTAGAAGTCTTCACTAAATCTTTGAAGTCTGCTCTTGT 844
||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 790 ACCTGAGCAAGGACTTAAGGAGCTAGAATTCTTCACTAAATCTTTGAAGTCTGCTCTTGT 849
Query 845 CTCTTGAATACGCA-A-TGATTCTT-CTTA 871
||||||||||| || | |||||||| ||||
Sbjct 850 CTCTTGAATACCCACAATGATTCTTTCTTA 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42548322509
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5